Co-expression analysis

Gene ID	Contig24062_at
Gene name
Homology with Arabidopsis	Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=9e+0)
Module size	6 genes
NF	0.59
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.87	Contig24062_at	Contig24062	-	-	9e+0	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig9549_at	Contig9549	-	-	1e-2	At3g50780	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig12788_at	Contig12788	-	-	1e-5	At1g32050	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig12787_at	Contig12787	-	-	6e-1	At2g33530	scpl46 (serine carboxypeptidase-like 46)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	Contig4552_s_at	Contig4552	-	-	2e+0	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.89	Contig18158_at	Contig18158	-	-	2e-2	At4g21010	transcription initiation factor-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
8.1	98.7	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
8.0	98.7	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
7.2	98.5	GSM372994	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.7	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
3.5	95.1	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.3	94.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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