Co-expression analysis

Gene ID	Contig24055_at
Gene name
Homology with Arabidopsis	Similar to At5g40451: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.71
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig24055_at	Contig24055	-	-	5e+0	At5g40451	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.89	HVSMEl0010C23r2_at	HVSMEl0010C23r2	-	-	1e+0	At4g03520	ATHM2	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	HVSMEl0010B18r2_at	HVSMEl0010B18r2	-	-	1e+0	At1g49130	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig8184_at	Contig8184	-	-	2e+0	Atcg00900	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig16332_at	Contig16332	-	-	3e-1	At5g41560	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig17080_at	Contig17080	-	-	9e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.6	99.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
12.7	99.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.9	93.4	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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