Co-expression analysis

Gene ID Contig24039_at
Gene name
Homology with ArabidopsisSimilar to At3g60600: VAP (VESICLE ASSOCIATED PROTEIN) (HF=1e+0)
Module size 6 genes
NF 0.35
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87Contig24039_atContig24039--1e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.5066.90.972623978_R_1403-2212_at2623978_R_1403-2212--2e+0At3g16350myb family transcription factorO.I.H.G.S.X.
0.4053.10.97S0000800072B12F1_atS0000800072B12F1--9e+0At1g07476unknown proteinO.I.H.G.S.X.
0.3647.10.95HT07P24u_atHT07P24u--4e+0At3g49305-O.I.H.G.S.X.
0.2427.20.92Contig322_atContig322--1e-5At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.1311.60.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.91HU05J12u_atHU05J12u--4e+0At1g12180-O.I.H.G.S.X.
0.6784.70.97HD03N13u_atHD03N13u--2e+1At5g42591unknown proteinO.I.H.G.S.X.
0.6077.30.92Contig943_s_atContig943--1e-1At1g68945unknown proteinO.I.H.G.S.X.
0.6077.30.95Contig24604_atContig24604--4e+0At5g01910unknown proteinO.I.H.G.S.X.
0.5774.90.90HW06L01u_atHW06L01u--3e+0At4g24440transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)O.I.H.G.S.X.
0.5572.00.89AF146270_atAF146270--1e+0At4g22360SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.5572.00.93HT08D22u_atHT08D22u--4e+0At5g66490unknown proteinO.I.H.G.S.X.
0.5572.00.94HW02O08u_atHW02O08u--3e+0At1g18335GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.5572.00.94HS09M06u_atHS09M06u--1e+0At3g48450nitrate-responsive NOI protein, putativeO.I.H.G.S.X.
0.5572.00.94EBro02_SQ005_L23_atEBro02_SQ005_L23--1e-3At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)O.I.H.G.S.X.
0.5572.00.95HVSMEa0006I22r2_x_atHVSMEa0006I22r2--5e-2At5g66400RAB18 (RESPONSIVE TO ABA 18)O.I.H.G.S.X.
0.5572.00.95HM02O11r_atHM02O11r--4e+0At3g21730dihydroneopterin aldolase family proteinO.I.H.G.S.X.
0.5066.90.90Contig2597_atContig2597--3e-12At4g11850PLDGAMMA1O.I.H.G.S.X.
0.5066.90.91EBro08_SQ002_C24_atEBro08_SQ002_C24--1e+0At4g20390integral membrane family proteinO.I.H.G.S.X.
0.5066.90.91rbags22i09_atrbags22i09--9e-11Atmg00285-O.I.H.G.S.X.
0.5066.90.91HC108A06_SK_atHC108A06_SK--8e-1At5g58280transcriptional factor B3 family proteinO.I.H.G.S.X.
0.5066.90.91HU11H01u_atHU11H01u--6e+0At5g63090LOB (LATERAL ORGAN BOUNDARIES)O.I.H.G.S.X.
0.5066.90.92HV_CEb0007D16r2_atHV_CEb0007D16r2--4e+0At3g18810protein kinase family proteinO.I.H.G.S.X.
0.5066.90.92S0001100001H03F1_atS0001100001H03F1--1e+1At5g09280pectate lyase family proteinO.I.H.G.S.X.
0.5066.90.92HV_CEa0008B06r2_atHV_CEa0008B06r2--3e+0At5g22140pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.5066.90.93HB16P12r_atHB16P12r--5e-2At1g0721030S ribosomal protein S18 familyO.I.H.G.S.X.
0.5066.90.93HV12M08u_s_atHV12M08u--1e+0At5g45090AtPP2-A7 (Phloem protein 2-A7)O.I.H.G.S.X.
0.5066.90.94rbaal34c03_atrbaal34c03--1e+0At3g15170CUC1 (CUP-SHAPED COTYLEDON1)O.I.H.G.S.X.
0.5066.90.94AF146269_atAF146269--2e+0At1g65720unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig2659_atContig2659--4e+0At4g05070unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig11626_atContig11626--4e-2At3g50550unknown proteinO.I.H.G.S.X.
0.5066.90.95rbaal2j07_atrbaal2j07--5e+0At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.5066.90.96HVSMEk0009B02r2_atHVSMEk0009B02r2--6e-2At1g72420-O.I.H.G.S.X.
0.5066.90.96HV_CEb0021G08r2_atHV_CEb0021G08r2--2e-2At4g04510protein kinase family proteinO.I.H.G.S.X.
0.5066.90.96EBro08_SQ011_O23_atEBro08_SQ011_O23--1e+0At1g03430AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)O.I.H.G.S.X.
0.4762.20.90HO02E06S_atHO02E06S--3e-1At1g76405unknown proteinO.I.H.G.S.X.
0.4762.20.93Contig25415_atContig25415--3e-4At2g24440selenium bindingO.I.H.G.S.X.
0.4661.00.93HZ51I22r_atHZ51I22r--1e-3At5g28840GME (GDP-D-MANNOSE 3',5'-EPIMERASE)O.I.H.G.S.X.
0.4661.00.93HVSMEf0003B06r2_atHVSMEf0003B06r2--1e+0At1g08080ACA7 (ALPHA CARBONIC ANHYDRASE 7)O.I.H.G.S.X.
0.4661.00.93Contig19209_atContig19209--7e+0At2g29420ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)O.I.H.G.S.X.
0.4661.00.94S0001100113A01F2_atS0001100113A01F2--7e-1At4g00026-O.I.H.G.S.X.
0.4661.00.95HF01L12T_atHF01L12T--4e+0At3g02140TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)O.I.H.G.S.X.
0.4661.00.95HZ47I09r_atHZ47I09r--7e-1At2g40085unknown proteinO.I.H.G.S.X.
0.4458.90.90HVSMEa0015K08r2_atHVSMEa0015K08r2--4e+0At4g28815transcription regulatorO.I.H.G.S.X.
0.4458.90.91M36941_atM36941--1e+0At5g47960ATRABA4CO.I.H.G.S.X.
0.4458.90.91HV_CEa0008F11r2_atHV_CEa0008F11r2--4e+0At5g39540-O.I.H.G.S.X.
0.4458.90.91AF427791_CDS-23_atAF427791_CDS-23--4e+0At3g30845unknown proteinO.I.H.G.S.X.
0.4458.90.93rbags25h19_atrbags25h19--2e-1At1g62570FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)O.I.H.G.S.X.
0.4458.90.93Contig10691_s_atContig10691--8e-1At1g67330unknown proteinO.I.H.G.S.X.
0.4458.90.93Contig21971_atContig21971--8e-1At1g17830unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig19947_atContig19947--2e-1At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.4458.90.95HW03H07u_x_atHW03H07u--1e+0At1g18510TET16 (TETRASPANIN 16)O.I.H.G.S.X.
0.4458.90.95RGH1a_s_atMla10_orf_3pri12--2e+0At3g62920unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig26110_atContig26110--3e+0At5g56452-O.I.H.G.S.X.
0.4356.40.89Contig26557_atContig26557--8e-1At5g60490FLA12O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.093.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM3634645 mM B(OH)3 treatment (5B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.591.9GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.591.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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