Co-expression analysis

Gene ID	Contig24039_at
Gene name
Homology with Arabidopsis	Similar to At3g60600: VAP (VESICLE ASSOCIATED PROTEIN) (HF=1e+0)
Module size	6 genes
NF	0.35
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig24039_at	Contig24039	-	-	1e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	HT07P24u_at	HT07P24u	-	-	4e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.92	Contig322_at	Contig322	-	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.0	93.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.5	91.9	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1612492_at, orthologous to the query gene, Contig24039_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	1612492_at	At3g60600	-	-	2e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1612940_at	At3g60600	hypothetical protein LOC100244154	-	8e-9	At2g38025	-	O.I.	H.G.	S.X.	Please select
0.41	58.7	1610711_s_at	At3g60600	-	-	4e+0	At4g28085	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1614129_at	At3g60600	hypothetical protein LOC100249542	-	2e-26	At3g50790	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	1610416_at	At3g60600	-	-	4e-4	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	1618727_at	At3g60600	hypothetical protein LOC100247185	-	9e-15	At2g46910	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1620133_at	At3g60600	hypothetical protein LOC100256241	-	3e-2	At4g13220	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1616888_at	At3g60600	similar to lactoylglutathione lyase, putative / glyoxalase I, putative	-	3e-73	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	1615149_at	At3g60600	hypothetical protein LOC100248175	-	4e+0	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.35	48.5	1607640_at	At3g60600	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1608988_at	At3g60600	hypothetical protein LOC100249728	-	1e+0	At3g50560	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618617_at	At3g60600	hypothetical protein LOC100244370	-	6e-19	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611359_at	At3g60600	hypothetical protein LOC100252133	-	2e+0	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1607271_at	At3g60600	hypothetical protein LOC100258274	-	2e-2	At3g26070	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609624_at	At3g60600	-	-	2e-27	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609508_at	At3g60600	hypothetical protein LOC100242787	-	4e-3	At5g45960	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1620755_at	At3g60600	hypothetical protein LOC100248862	-	7e-20	At1g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1616874_at	At3g60600	-	-	2e-18	At5g58250	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1614237_a_at	At3g60600	hypothetical protein LOC100259646	-	6e-2	At2g20890	PSB29	O.I.	H.G.	S.X.	Please select
0.27	34.0	1613726_at	At3g60600	-	-	4e-13	At4g15110	CYP97B3	O.I.	H.G.	S.X.	Please select
0.27	34.0	1609474_at	At3g60600	hypothetical protein LOC100252381	-	2e-3	At2g41040	methyltransferase-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	1611683_s_at	At3g60600	similar to A_IG002N01.31 gene product	-	1e-30	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1610957_at	At3g60600	hypothetical protein LOC100241474	-	4e+0	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.23	27.5	1607055_at	At3g60600	hypothetical protein LOC100264430	-	2e-2	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1616722_at	At3g60600	hypothetical LOC100246522	-	1e-22	At1g22850	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	1611605_s_at	At3g60600	hypothetical protein LOC100257686	-	2e-3	At2g31050	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1613808_at	At3g60600	hypothetical protein LOC100241474	-	2e-8	At3g51370	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	1610347_s_at	At3g60600	similar to NADH dehydrogenase subunit I	-	2e+0	At1g35430	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1606648_at	At3g60600	hypothetical protein LOC100257724	-	6e-37	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1611279_s_at	At3g60600	-	-	0	Atcg01010	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	1609736_at	At3g60600	hypothetical protein LOC100248605	-	6e-6	At2g34460	flavin reductase-related	O.I.	H.G.	S.X.	Please select
0.15	15.6	1618899_at	At3g60600	-	-	7e-18	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1610863_at	At3g60600	cullin 1	-	2e-19	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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