Co-expression analysis

Gene ID Contig24039_at
Gene name
Homology with ArabidopsisSimilar to At3g60600: VAP (VESICLE ASSOCIATED PROTEIN) (HF=1e+0)
Module size 6 genes
NF 0.35
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87Contig24039_atContig24039--1e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.5066.90.972623978_R_1403-2212_at2623978_R_1403-2212--2e+0At3g16350myb family transcription factorO.I.H.G.S.X.
0.4053.10.97S0000800072B12F1_atS0000800072B12F1--9e+0At1g07476unknown proteinO.I.H.G.S.X.
0.3647.10.95HT07P24u_atHT07P24u--4e+0At3g49305-O.I.H.G.S.X.
0.2427.20.92Contig322_atContig322--1e-5At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.1311.60.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.093.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM3634645 mM B(OH)3 treatment (5B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.591.9GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.591.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1612492_at, orthologous to the query gene, Contig24039_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.91612492_atAt3g60600--2e-1At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.4666.51612940_atAt3g60600hypothetical protein LOC100244154-8e-9At2g38025-O.I.H.G.S.X.
0.4158.71610711_s_atAt3g60600--4e+0At4g28085unknown proteinO.I.H.G.S.X.
0.4057.71614129_atAt3g60600hypothetical protein LOC100249542-2e-26At3g50790late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.3954.91610416_atAt3g60600--4e-4At5g19210DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3853.61618727_atAt3g60600hypothetical protein LOC100247185-9e-15At2g46910plastid-lipid associated protein PAP / fibrillin family proteinO.I.H.G.S.X.
0.3751.71620133_atAt3g60600hypothetical protein LOC100256241-3e-2At4g13220unknown proteinO.I.H.G.S.X.
0.3548.51616888_atAt3g60600similar to lactoylglutathione lyase, putative / glyoxalase I, putative-3e-73At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.3548.51615149_atAt3g60600hypothetical protein LOC100248175-4e+0At5g64200ATSC35O.I.H.G.S.X.
0.3548.51607640_atAt3g60600hypothetical protein LOC100249595-1e-19At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)O.I.H.G.S.X.
0.3446.81608988_atAt3g60600hypothetical protein LOC100249728-1e+0At3g50560short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3243.11618617_atAt3g60600hypothetical protein LOC100244370-6e-19At2g44920thylakoid lumenal 15 kDa protein, chloroplastO.I.H.G.S.X.
0.3243.11611359_atAt3g60600hypothetical protein LOC100252133-2e+0At1g78380ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)O.I.H.G.S.X.
0.3141.31607271_atAt3g60600hypothetical protein LOC100258274-2e-2At3g26070plastid-lipid associated protein PAP / fibrillin family proteinO.I.H.G.S.X.
0.3141.31609624_atAt3g60600--2e-27At5g19855unknown proteinO.I.H.G.S.X.
0.3141.31609508_atAt3g60600hypothetical protein LOC100242787-4e-3At5g45960GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3039.41620755_atAt3g60600hypothetical protein LOC100248862-7e-20At1g27385unknown proteinO.I.H.G.S.X.
0.3039.41616874_atAt3g60600--2e-18At5g58250unknown proteinO.I.H.G.S.X.
0.2937.71614237_a_atAt3g60600hypothetical protein LOC100259646-6e-2At2g20890PSB29O.I.H.G.S.X.
0.2734.01613726_atAt3g60600--4e-13At4g15110CYP97B3O.I.H.G.S.X.
0.2734.01609474_atAt3g60600hypothetical protein LOC100252381-2e-3At2g41040methyltransferase-relatedO.I.H.G.S.X.
0.2530.51611683_s_atAt3g60600similar to A_IG002N01.31 gene product-1e-30At4g01050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2428.71610957_atAt3g60600hypothetical protein LOC100241474-4e+0At4g09320NDPK1O.I.H.G.S.X.
0.2327.51607055_atAt3g60600hypothetical protein LOC100264430-2e-2At1g44790ChaC-like family proteinO.I.H.G.S.X.
0.2225.61616722_atAt3g60600hypothetical LOC100246522-1e-22At1g22850-O.I.H.G.S.X.
0.2124.01611605_s_atAt3g60600hypothetical protein LOC100257686-2e-3At2g31050plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.2022.41613808_atAt3g60600hypothetical protein LOC100241474-2e-8At3g51370protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2022.41610347_s_atAt3g60600similar to NADH dehydrogenase subunit I-2e+0At1g35430unknown proteinO.I.H.G.S.X.
0.1920.91606648_atAt3g60600hypothetical protein LOC100257724-6e-37At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.1718.21611279_s_atAt3g60600--0Atcg01010-O.I.H.G.S.X.
0.1616.71609736_atAt3g60600hypothetical protein LOC100248605-6e-6At2g34460flavin reductase-relatedO.I.H.G.S.X.
0.1515.61618899_atAt3g60600--7e-18At5g57040lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.066.81610863_atAt3g60600cullin 1-2e-19At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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