Co-expression analysis

Gene ID Contig24039_at
Gene name
Homology with ArabidopsisSimilar to At3g60600: VAP (VESICLE ASSOCIATED PROTEIN) (HF=1e+0)
Module size 6 genes
NF 0.35
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87Contig24039_atContig24039--1e+0At3g60600VAP (VESICLE ASSOCIATED PROTEIN)O.I.H.G.S.X.
0.5066.90.972623978_R_1403-2212_at2623978_R_1403-2212--2e+0At3g16350myb family transcription factorO.I.H.G.S.X.
0.4053.10.97S0000800072B12F1_atS0000800072B12F1--9e+0At1g07476unknown proteinO.I.H.G.S.X.
0.3647.10.95HT07P24u_atHT07P24u--4e+0At3g49305-O.I.H.G.S.X.
0.2427.20.92Contig322_atContig322--1e-5At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.1311.60.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.093.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM3634645 mM B(OH)3 treatment (5B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.591.9GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.591.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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