Co-expression analysis

Gene ID Contig2399_at
Gene name
Homology with ArabidopsisSimilar to At2g04700: ferredoxin thioredoxin reductase catalytic beta chain family protein (HF=6e-5)
Module size 7 genes
NF 0.42
%ile 58.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.93Contig2399_atContig2399--6e-5At2g04700ferredoxin thioredoxin reductase catalytic beta chain family proteinO.I.H.G.S.X.
0.6784.70.95Contig12667_atContig12667--2e+0At1g54540-O.I.H.G.S.X.
0.6784.70.95Contig11393_atContig11393--1e-4At3g02250unknown proteinO.I.H.G.S.X.
0.3647.10.95HU04B19u_atHU04B19u--4e+0At3g48480cysteine-type peptidaseO.I.H.G.S.X.
0.3342.60.95Contig4650_s_atContig4650--5e-9At5g36940CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)O.I.H.G.S.X.
0.3138.60.95Contig9645_atContig9645--4e-11At4g26470calcium ion bindingO.I.H.G.S.X.
0.2021.10.95Contig10036_atContig10036--2e+0At1g30060COP1-interacting protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.197.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.692.3GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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