Co-expression analysis

Gene ID Contig23961_at
Gene name
Homology with ArabidopsisSimilar to At4g14450: unknown protein (HF=3e-1)
Module size 6 genes
NF 0.57
%ile 79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.93Contig23961_atContig23961--3e-1At4g14450unknown proteinO.I.H.G.S.X.
0.6784.70.94HV_CEa0017M22f_atHV_CEa0017M22f--1e+1At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.5572.00.94Contig19021_atContig19021--9e-8At1g78650POLD3O.I.H.G.S.X.
0.5066.90.94Contig15180_atContig15180--2e-1At1g57690F-box family proteinO.I.H.G.S.X.
0.4762.20.94Contig11462_atContig11462--8e-5At5g41770crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.S.X.
0.3849.50.94Contig306_s_atContig306--9e-6At4g19200proline-rich family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.93Contig7254_atContig7254--6e+0At2g17880DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.5572.00.92Contig6871_atContig6871--6e-11At3g22290unknown proteinO.I.H.G.S.X.
0.5369.70.91Contig22626_atContig22626--1e+0At5g64260EXL2 (EXORDIUM LIKE 2)O.I.H.G.S.X.
0.5066.90.92Contig1030_s_atContig1030--7e-83At1g31340RUB1 (RELATED TO UBIQUITIN 1)O.I.H.G.S.X.
0.5066.90.93Contig14973_atContig14973--3e-14At4g39850PXA1 (PEROXISOMAL ABC TRANSPORTER 1)O.I.H.G.S.X.
0.4863.20.89HVSMEf0021O19r2_s_atHVSMEf0021O19r2--5e-6At3g02020AK3 (ASPARTATE KINASE 3)O.I.H.G.S.X.
0.4661.00.91Contig17164_atContig17164--7e-1At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.4661.00.94Contig4560_atContig4560--2e-1At1g29000heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4458.90.90Contig10489_atContig10489--4e-2At5g19930integral membrane family proteinO.I.H.G.S.X.
0.4458.90.91Contig12314_atContig12314--9e+0At5g57567unknown proteinO.I.H.G.S.X.
0.4458.90.92Contig1867_atContig1867--1e-2At1g14540anionic peroxidase, putativeO.I.H.G.S.X.
0.3950.50.88HVSMEi0003L18r2_atHVSMEi0003L18r2--1e+1At5g64120peroxidase, putativeO.I.H.G.S.X.
0.3849.50.90Contig8480_atContig8480--1e-21At5g03540ATEXO70A1 (exocyst subunit EXO70 family protein A1)O.I.H.G.S.X.
0.3849.50.91HVSMEg0015L13f2_atHVSMEg0015L13f2--3e+0At2g39120ubiquitin thiolesteraseO.I.H.G.S.X.
0.3747.90.93Contig19683_atContig19683--1e+0At3g24820BSD domain-containing proteinO.I.H.G.S.X.
0.3647.10.93Contig8574_atContig8574--6e+0At5g66600unknown proteinO.I.H.G.S.X.
0.3545.10.88Contig10618_atContig10618--2e+0At4g19480unknown proteinO.I.H.G.S.X.
0.3342.60.89HU12H10u_atHU12H10u--2e+1At5g56080NAS2 (NICOTIANAMINE SYNTHASE 2)O.I.H.G.S.X.
0.3342.60.90Contig1877_atContig1877protein Z (180 AA)-7e-1At1g47710serpin, putative / serine protease inhibitor, putativeO.I.H.G.S.X.
0.3342.60.93Contig15057_atContig15057--4e+0At4g16146-O.I.H.G.S.X.
0.3342.60.94HV_CEa0008J10r2_atHV_CEa0008J10r2--4e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.3240.30.93HVSMEm0003A13r2_atHVSMEm0003A13r2--1e+0At5g63500unknown proteinO.I.H.G.S.X.
0.3138.60.90HU09E15u_x_atHU09E15u--1e+1At4g37090unknown proteinO.I.H.G.S.X.
0.3138.60.92Contig11195_atContig11195--4e+0At5g21910unknown proteinO.I.H.G.S.X.
0.3138.60.92Contig22487_atContig22487--6e+0At3g18470unknown proteinO.I.H.G.S.X.
0.3037.00.91Contig12128_atContig12128--1e+0At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)O.I.H.G.S.X.
0.2935.50.92Contig13361_atContig13361--2e-3At1g26660c-myc binding protein, putative / prefoldin, putativeO.I.H.G.S.X.
0.2935.50.92HV09K10u_atHV09K10u--2e-2At3g0492040S ribosomal protein S24 (RPS24A)O.I.H.G.S.X.
0.2935.50.93Contig5175_atContig5175--4e-11At5g19855unknown proteinO.I.H.G.S.X.
0.2732.10.92HVSMEk0016N13r2_atHVSMEk0016N13r2--3e-1At5g03660unknown proteinO.I.H.G.S.X.
0.2732.10.92Contig3070_atContig3070--8e+0At5g13260unknown proteinO.I.H.G.S.X.
0.2732.10.95HV_CEa0008P09r2_s_atHV_CEa0008P09r2--1e+0At5g35520MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)O.I.H.G.S.X.
0.2630.40.90Contig19272_atContig19272--8e-3At3g01513unknown proteinO.I.H.G.S.X.
0.2528.90.92Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.2528.90.92Contig26248_atContig26248--4e+0At3g51100unknown proteinO.I.H.G.S.X.
0.2528.90.93Contig5176_atContig5176--5e+0At2g18240RER1 protein, putativeO.I.H.G.S.X.
0.2528.90.93Contig11151_atContig11151--1e+1At5g20100unknown proteinO.I.H.G.S.X.
0.2528.90.93Contig9311_atContig9311--5e+0At5g01880zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.5GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.298.5GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.498.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.997.9GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.597.6GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.597.6GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.397.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.097.2GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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