Co-expression analysis

Gene ID Contig23961_at
Gene name
Homology with ArabidopsisSimilar to At4g14450: unknown protein (HF=3e-1)
Module size 6 genes
NF 0.57
%ile 79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.93Contig23961_atContig23961--3e-1At4g14450unknown proteinO.I.H.G.S.X.
0.6784.70.94HV_CEa0017M22f_atHV_CEa0017M22f--1e+1At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.5572.00.94Contig19021_atContig19021--9e-8At1g78650POLD3O.I.H.G.S.X.
0.5066.90.94Contig15180_atContig15180--2e-1At1g57690F-box family proteinO.I.H.G.S.X.
0.4762.20.94Contig11462_atContig11462--8e-5At5g41770crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.S.X.
0.3849.50.94Contig306_s_atContig306--9e-6At4g19200proline-rich family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.5GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.298.5GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.498.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.997.9GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.597.6GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
5.597.6GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.397.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.097.2GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6499.1.A1_at, orthologous to the query gene, Contig23961_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.0Zm.6499.1.A1_atAt4g14450hypothetical protein LOC100193282-2e+0At2g12940UNE4 (unfertilized embryo sac 4)O.I.H.G.S.X.
0.5369.1Zm.12370.1.S1_atAt4g14450hypothetical protein LOC100272446-2e+0Atmg01310-O.I.H.G.S.X.
0.4759.9Zm.1911.1.A1_atAt4g14450hypothetical protein LOC100191691-1e+0At5g46730glycine-rich proteinO.I.H.G.S.X.
0.3233.4ZmAffx.286.1.A1_atAt4g14450--2e-1At1g07745RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)O.I.H.G.S.X.
0.1912.8Zm.5072.1.A1_atAt4g14450hypothetical protein LOC100191823-3e-18At1g72090radical SAM domain-containing protein / TRAM domain-containing proteinO.I.H.G.S.X.
0.1811.6Zm.16935.1.S1_atAt4g14450hypothetical protein LOC100193218-2e+0At4g22650-O.I.H.G.S.X.
0.158.6Zm.9625.1.A1_x_atAt4g14450Hypothetical protein LOC100216879-3e-1At4g33660unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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