Co-expression analysis

Gene ID	Contig23961_at
Gene name
Homology with Arabidopsis	Similar to At4g14450: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.57
%ile	79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	Contig23961_at	Contig23961	-	-	3e-1	At4g14450	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	HV_CEa0017M22f_at	HV_CEa0017M22f	-	-	1e+1	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig19021_at	Contig19021	-	-	9e-8	At1g78650	POLD3	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig15180_at	Contig15180	-	-	2e-1	At1g57690	F-box family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig11462_at	Contig11462	-	-	8e-5	At5g41770	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig306_s_at	Contig306	-	-	9e-6	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.5	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.2	98.5	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.9	97.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.5	97.6	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.9	97.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.4	96.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.224756.1.S1_s_at, orthologous to the query gene, Contig23961_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.224756.1.S1_s_at	At4g14450	hypothetical protein	-	7e-16	At3g23550	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.5273.1.A1_at	At4g14450	hypothetical protein	-	7e-1	At4g29735	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.224757.1.S1_at	At4g14450	hypothetical protein	-	8e-16	At3g23550	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.118921.1.S1_at	At4g14450	hypothetical protein	-	1e+0	At1g17800	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.97732.1.S1_s_at	At4g14450	hypothetical protein	-	1e+0	At3g22231	PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.152125.1.S1_at	At4g14450	hypothetical protein	-	2e-39	At5g54770	THI1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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