Co-expression analysis

Gene ID	Contig23929_at
Gene name
Homology with Arabidopsis	Similar to At4g01850: SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) (HF=3e+0)
Module size	7 genes
NF	0.40
%ile	54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig23929_at	Contig23929	-	-	3e+0	At4g01850	SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig8683_at	Contig8683	-	-	5e-1	At1g58070	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig7102_at	Contig7102	-	-	2e-73	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig21681_at	Contig21681	-	-	4e+0	At5g32450	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig11352_at	Contig11352	-	-	3e-5	At3g56120	Met-10+ like family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig5302_at	Contig5302	-	-	2e-2	At2g32190	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig10102_at	Contig10102	-	-	9e-1	At5g08130	BIM1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.0	98.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.7	96.9	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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