Co-expression analysis

Gene ID Contig23928_at
Gene name
Homology with ArabidopsisSimilar to At5g28630: glycine-rich protein (HF=2e-2)
Module size 6 genes
NF 0.20
%ile 25.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.78Contig23928_atContig23928--2e-2At5g28630glycine-rich proteinO.I.H.G.S.X.
0.5066.90.84Contig1965_atContig1965--1e-13At1g55510BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)O.I.H.G.S.X.
0.4458.90.86Contig9215_atContig9215--8e-16At5g26360chaperonin, putativeO.I.H.G.S.X.
0.1818.20.80Contig19734_atContig19734--2e+0At2g23900glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.1615.30.84Contig9214_atContig9214--5e-1At2g05990MOD1 (MOSAIC DEATH 1)O.I.H.G.S.X.
0.064.80.84Contig3376_atContig3376--2e-1At1g68020ATTPS6O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.699.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.799.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.998.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.997.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
4.596.7GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.596.7GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.496.6GSM419972Lemma_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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