CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig23898_at

Gene name
Homology with Arabidopsis Similar to At2g01610: invertase/pectin methylesterase inhibitor family protein (HF=4e-1)

Module size 6 genes

NF 0.91

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.95 Contig23898_at Contig23898 - - 4e-1 At2g01610 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.91 98.1 0.95 Contig15145_at Contig15145 - - 1e-61 At3g09920 PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) O.I. H.G. S.X.
0.91 98.1 0.96 HV_CEa0012H15r2_at HV_CEa0012H15r2 - - 4e+0 At1g11450 nodulin MtN21 family protein O.I. H.G. S.X.
0.91 98.1 0.96 Contig9426_at Contig9426 - - 2e-2 At5g51340 unknown protein O.I. H.G. S.X.
0.91 98.1 0.96 Contig21454_x_at Contig21454 - - 4e+0 At4g01265 raffinose synthase family protein / seed imbibition protein-related O.I. H.G. S.X.
0.57 74.9 0.96 Contig21304_s_at Contig21304 - - 3e+0 At5g10390 histone H3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.3 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6 99.0 GSM372948 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372966 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.5 95.1 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
3.4 94.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g01610, orthologous to the query gene, Contig23898_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.92 96.0 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. H.G. S.X.
0.86 93.1 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. H.G. S.X.
0.83 91.4 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM O.I. H.G. S.X.
0.74 86.1 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. H.G. S.X.
0.74 86.1 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. H.G. S.X.
0.69 82.9 At1g68360 843165 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO O.I. H.G. S.X.
0.67 81.6 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. H.G. S.X.
0.67 81.6 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 At4g23720 828472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. H.G. S.X.
0.50 65.3 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. H.G. S.X.
0.41 52.4 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. H.G. S.X.
0.39 48.4 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA O.I. H.G. S.X.
0.36 43.6 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage