Co-expression analysis

Gene ID	Contig23884_at
Gene name
Homology with Arabidopsis	Similar to At3g60590: unknown protein (HF=1e+0)
Module size	13 genes
NF	0.34
%ile	45.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.86	Contig23884_at	Contig23884	-	-	1e+0	At3g60590	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.91	Contig7945_at	Contig7945	-	-	6e-57	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.91	Contig23011_at	Contig23011	-	-	3e-26	At5g28650	WRKY74	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.89	Contig2163_at	Contig2163	-	-	3e-1	At2g04046	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig9920_at	Contig9920	-	-	7e-1	At3g15095	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig18430_at	Contig18430	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.89	Contig23200_at	Contig23200	-	-	6e-6	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.90	Contig2490_at	Contig2490	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	Contig982_at	Contig982	-	-	2e-1	At5g20520	WAV2 (WAVY GROWTH 2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.91	HV10I20u_at	HV10I20u	-	-	2e-8	At5g20940	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.89	Contig17047_at	Contig17047	-	-	2e+0	At3g13440	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.92	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.4	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
2.7	92.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.5	91.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.3	90.9	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
2.3	90.9	GSM68906	27 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
2.3	90.9	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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