Co-expression analysis

Gene ID	Contig23856_at
Gene name
Homology with Arabidopsis	Similar to At1g67590: remorin family protein (HF=1e+0)
Module size	38 genes
NF	0.35
%ile	47.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.4	0.92	Contig23856_at	Contig23856	-	-	1e+0	At1g67590	remorin family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.92	HV14B03u_at	HV14B03u	-	-	3e+0	At4g36170	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig13509_at	Contig13509	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.94	rbaal17m22_at	rbaal17m22	-	-	3e-1	At5g28615	-	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.92	EBro08_SQ010_A22_at	EBro08_SQ010_A22	-	-	1e+1	At5g39600	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	HV12N12u_at	HV12N12u	-	-	7e-2	At5g41200	AGL75 (AGAMOUS-LIKE 75)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	rbaak19o02_s_at	rbaak19o02	-	-	1e+0	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.93	Contig16016_at	Contig16016	-	-	2e+0	At1g59710	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.94	HW05P14u_at	HW05P14u	-	-	2e-1	At1g64830	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig24913_at	Contig24913	-	-	1e+0	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.93	EBro08_SQ003_C14_at	EBro08_SQ003_C14	-	-	3e+0	At5g56880	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig21803_at	Contig21803	-	-	1e+0	At5g57570	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	HVSMEb0011N20f_at	HVSMEb0011N20f	-	-	3e+0	At4g32030	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	HT06B11r_at	HT06B11r	-	-	3e-1	At3g48344	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig17645_at	Contig17645	-	-	2e+0	At3g56810	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	EBro02_SQ003_O18_at	EBro02_SQ003_O18	-	-	8e-1	At1g50670	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig15319_at	Contig15319	-	-	7e-1	At5g27830	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	HT10M15u_at	HT10M15u	-	-	4e+0	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	HVSMEb0002K02r2_s_at	HVSMEb0002K02r2	-	-	4e+0	At5g07500	PEI1	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	HV11D10u_s_at	HV11D10u	-	-	1e+1	At5g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	EBro08_SQ004_I03_at	EBro08_SQ004_I03	-	-	5e+0	At4g34750	auxin-responsive protein, putative / small auxin up RNA (SAUR_E)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig17116_at	Contig17116	-	-	2e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	HV05G21u_x_at	HV05G21u	-	-	1e+1	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	HV_CEb0021G08r2_at	HV_CEb0021G08r2	-	-	2e-2	At4g04510	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig6442_at	Contig6442	-	-	2e-1	At2g38920	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	HT11K17u_at	HT11K17u	-	-	2e-1	At1g24590	DRNL (DORNROSCHEN-LIKE)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	HVSMEm0021I24r2_at	HVSMEm0021I24r2	-	-	3e+0	At1g68650	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig5979_at	Contig5979	-	-	4e-15	At5g20080	NADH-cytochrome b5 reductase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	HC01H02_T3_at	HC01H02_T3	-	-	3e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	HT05M16u_at	HT05M16u	-	-	7e-5	At5g60730	anion-transporting ATPase family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.0	93.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.7	92.7	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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