Co-expression analysis

Gene ID Contig2379_s_at
Gene name
Homology with ArabidopsisSimilar to At2g04700: ferredoxin thioredoxin reductase catalytic beta chain family protein (HF=2e-8)
Module size 16 genes
NF 0.66
%ile 88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.96Contig2379_s_atContig2379--2e-8At2g04700ferredoxin thioredoxin reductase catalytic beta chain family proteinO.I.H.G.S.X.
0.7790.80.96HT06M11u_atHT06M11u--1e+1Atcg01310-O.I.H.G.S.X.
0.7790.80.96EBro08_SQ007_C12_atEBro08_SQ007_C12--9e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.7589.50.97HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.7287.40.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.
0.7187.10.96Contig12986_atContig12986--7e-13At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.6380.30.96Contig245_s_atContig245--2e+0At4g16380metal ion bindingO.I.H.G.S.X.
0.6380.30.969507414_R_4264-4644_at9507414_R_4264-4644--1e+1At5g06320NHL3O.I.H.G.S.X.
0.6380.30.96HY06F24u_x_atHY06F24u--1e+1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.6178.70.96baal1j07_atbaal1j07--5e-15At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.5975.80.96Contig23039_atContig23039--4e-2At2g45920U-box domain-containing proteinO.I.H.G.S.X.
0.5674.30.97HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.
0.5674.30.96Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.5572.00.97HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.5369.70.96Contig21533_atContig21533--2e+0At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.5369.70.96V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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