Co-expression analysis

Gene ID Contig23641_at
Gene name
Homology with ArabidopsisSimilar to At3g51850: CPK13 (HF=1e-17)
Module size 21 genes
NF 0.45
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6885.10.92Contig23641_atContig23641--1e-17At3g51850CPK13O.I.H.G.S.X.
0.7287.40.96Contig4880_atContig4880--2e-20At1g61800GPT2O.I.H.G.S.X.
0.6480.90.96Contig5417_atContig5417--4e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6380.30.96Contig2837_atContig2837--1e-12At3g23800SBP3 (selenium-binding protein 3)O.I.H.G.S.X.
0.6279.10.96Contig6461_s_atContig6461--7e-17At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.5674.30.96Contig4574_atContig4574--7e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.5572.00.96Contig3526_atContig3526--1e-3At1g11910aspartyl protease family proteinO.I.H.G.S.X.
0.5572.00.97Contig3563_atContig3563--2e+0At5g54000oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.5268.30.95Contig5246_s_atContig5246--3e-13At1g22450COX6B (CYTOCHROME C OXIDASE 6B)O.I.H.G.S.X.
0.5066.90.97Contig5995_atContig5995--2e+0At3g12160RABA4D (RAB GTPASE HOMOLOG A4D)O.I.H.G.S.X.
0.4963.70.96Contig2986_atContig2986--1e-39At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.4661.00.94Contig4656_atContig4656--1e-3At5g60570kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4458.90.97Contig5874_s_atContig5874--1e+0At1g48610AT hook motif-containing proteinO.I.H.G.S.X.
0.4255.20.96Contig4563_atContig4563--5e-15At3g17240mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)O.I.H.G.S.X.
0.4153.90.95Contig8286_atContig8286--3e-2At3g19010oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4153.90.96Contig4747_atContig4747--2e+0At2g05620PGR5 (proton gradient regulation 5)O.I.H.G.S.X.
0.3647.10.95Contig4302_atContig4302--8e-2At5g48640cyclin family proteinO.I.H.G.S.X.
0.3545.10.96EBma04_SQ003_K13_s_atEBma04_SQ003_K13--2e+0At3g60520unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig22451_atContig22451--1e-1At2g23320WRKY15O.I.H.G.S.X.
0.2326.10.95Contig3007_s_atContig3007--3e-7At3g10860ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.1716.90.93Contig14162_atContig14162--2e-14At4g36400FAD linked oxidase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.595.1GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.494.8GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.993.4GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.792.7GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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