CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig2350_at

Gene name
Homology with Arabidopsis Similar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=8e-1)

Module size 7 genes

NF 0.17

%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.8 0.93 Contig2350_at Contig2350 - - 8e-1 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) O.I. H.G. S.X.
0.33 42.6 0.95 Contig9550_at Contig9550 - - 3e-1 At4g33690 unknown protein O.I. H.G. S.X.
0.18 18.2 0.94 Contig7620_at Contig7620 - - 1e-11 At2g01060 myb family transcription factor O.I. H.G. S.X.
0.13 11.6 0.94 Contig3847_at Contig3847 - - 4e-9 At3g26935 zinc finger (DHHC type) family protein O.I. H.G. S.X.
0.10 8.4 0.95 Contig10536_at Contig10536 - - 3e-2 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) O.I. H.G. S.X.
0.09 7.4 0.94 Contig14516_at Contig14516 glutathione synthetase - 3e-2 At5g27380 GSH2 (GLUTATHIONE SYNTHETASE 2) O.I. H.G. S.X.
0.07 5.8 0.95 Contig3263_at Contig3263 - - 9e-38 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.30	37.0	0.88	Contig15904_at	Contig15904	-	-	4e+0	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.
0.29	35.5	0.96	Contig2832_s_at	Contig2832	-	-	6e+0	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.27	32.1	0.94	Contig13359_at	Contig13359	-	-	4e-10	At1g11240	unknown protein	O.I.	H.G.	S.X.
0.22	24.2	0.94	Contig4087_at	Contig4087	-	-	3e-4	At2g37120	DNA-binding S1FA family protein	O.I.	H.G.	S.X.
0.22	24.2	0.92	M58754_s_at	M58754	acyl carrier protein III precursor	-	4e-1	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.
0.21	22.6	0.92	Contig16147_at	Contig16147	-	-	2e+0	At3g61571	unknown protein	O.I.	H.G.	S.X.
0.19	19.6	0.93	Contig9057_at	Contig9057	-	-	8e-4	At1g75630	AVA-P4	O.I.	H.G.	S.X.
0.19	19.6	0.94	Contig13717_at	Contig13717	-	-	8e-22	At2g37590	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.18	18.2	0.92	HW05J24u_s_at	HW05J24u	-	-	4e+0	At1g17710	phosphatase	O.I.	H.G.	S.X.
0.17	16.9	0.92	Contig3231_at	Contig3231	-	-	1e-23	At4g23900	nucleoside diphosphate kinase 4 (NDK4)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.1 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.7 98.9 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
5.2 97.4 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.2 96.3 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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