Co-expression analysis

Gene ID	Contig2350_at
Gene name
Homology with Arabidopsis	Similar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=8e-1)
Module size	7 genes
NF	0.17
%ile	20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.93	Contig2350_at	Contig2350	-	-	8e-1	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig9550_at	Contig9550	-	-	3e-1	At4g33690	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig7620_at	Contig7620	-	-	1e-11	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig3847_at	Contig3847	-	-	4e-9	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig10536_at	Contig10536	-	-	3e-2	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig14516_at	Contig14516	glutathione synthetase	-	3e-2	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1620679_at, orthologous to the query gene, Contig2350_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.7	1620679_at	At1g26560	hypothetical protein LOC100255914	-	2e-16	At3g18070	BGLU43 (BETA GLUCOSIDASE 43)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1612181_at	At1g26560	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.54	75.7	1607101_s_at	At1g26560	hypothetical protein LOC100245611	-	2e-67	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.49	69.3	1620799_at	At1g26560	hypothetical protein LOC100241396	-	2e-2	At4g35987	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1606447_at	At1g26560	-	-	1e+0	At1g55630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1614416_at	At1g26560	hypothetical protein LOC100244960	-	8e-6	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.44	64.1	1617068_at	At1g26560	hypothetical protein LOC100246568	-	8e-12	At1g10760	SEX1 (STARCH EXCESS 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609252_at	At1g26560	hypothetical protein LOC100241396	-	5e-3	At5g53270	seed maturation family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612031_at	At1g26560	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1622090_at	At1g26560	hypothetical protein LOC100260385	-	1e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	1618318_at	At1g26560	hypothetical protein LOC100266352	-	2e-12	At1g22240	APUM8 (Arabidopsis Pumilio 8)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1615166_at	At1g26560	-	-	3e+0	At3g51020	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1607794_a_at	At1g26560	hypothetical protein LOC100243178	-	1e-10	At3g61610	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1610742_at	At1g26560	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1610617_at	At1g26560	hypothetical protein LOC100258419	-	6e-3	At2g41475	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611198_s_at	At1g26560	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614761_at	At1g26560	hypothetical protein LOC100266857	-	4e+0	At1g69920	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1612177_at	At1g26560	-	-	3e+0	At3g63210	MARD1	O.I.	H.G.	S.X.	Please select
0.30	39.4	1608031_at	At1g26560	hypothetical protein LOC100253247	-	4e-20	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1612123_at	At1g26560	hypothetical protein LOC100241410	-	3e-1	At1g14410	WHY1 (WHIRLY 1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1621259_at	At1g26560	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612267_at	At1g26560	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.24	28.7	1607537_at	At1g26560	hypothetical protein LOC100254390	-	2e+0	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1621221_at	At1g26560	hypothetical protein LOC100252472	-	7e-28	At5g11900	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1609427_at	At1g26560	similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein	-	2e-12	At4g37670	GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1615676_a_at	At1g26560	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	O.I.	H.G.	S.X.	Please select
0.17	18.2	1609708_at	At1g26560	hypothetical protein LOC100266352	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1609810_at	At1g26560	hypothetical protein LOC100245397	-	3e-32	At4g08900	arginase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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