Co-expression analysis

Gene ID	Contig2350_at
Gene name
Homology with Arabidopsis	Similar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=8e-1)
Module size	7 genes
NF	0.17
%ile	20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.93	Contig2350_at	Contig2350	-	-	8e-1	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig9550_at	Contig9550	-	-	3e-1	At4g33690	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig7620_at	Contig7620	-	-	1e-11	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig3847_at	Contig3847	-	-	4e-9	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig10536_at	Contig10536	-	-	3e-2	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig14516_at	Contig14516	glutathione synthetase	-	3e-2	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.122940.1.S1_at, orthologous to the query gene, Contig2350_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	PtpAffx.122940.1.S1_at	At1g26560	-	-	6e-10	At3g18080	BGLU44 (B-S GLUCOSIDASE 44)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.11360.1.A1_at	At1g26560	hypothetical protein	-	3e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.210690.1.S1_at	At1g26560	hypothetical protein	-	8e-13	At1g28110	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.111899.1.S1_at	At1g26560	hypothetical protein	-	3e-69	At3g57880	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.44301.2.A1_at	At1g26560	hypothetical protein	-	7e-6	At3g02640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.26585.2.A1_at	At1g26560	hypothetical protein	-	2e-6	At5g48380	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.207762.1.S1_at	At1g26560	2-oxoglutarate-dependent dioxygenase	-	2e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.17419.1.A1_at	At1g26560	auxin influx carrier component	-	1e-1	At1g77690	LAX3 (LIKE AUX1 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.1334.1.S1_at	At1g26560	hypothetical protein	-	1e+0	At4g22340	phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.20296.1.A1_at	At1g26560	-	-	4e-31	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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