CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig2350_at

Gene name
Homology with Arabidopsis Similar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=8e-1)

Module size 7 genes

NF 0.17

%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.8 0.93 Contig2350_at Contig2350 - - 8e-1 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) O.I. H.G. S.X.
0.33 42.6 0.95 Contig9550_at Contig9550 - - 3e-1 At4g33690 unknown protein O.I. H.G. S.X.
0.18 18.2 0.94 Contig7620_at Contig7620 - - 1e-11 At2g01060 myb family transcription factor O.I. H.G. S.X.
0.13 11.6 0.94 Contig3847_at Contig3847 - - 4e-9 At3g26935 zinc finger (DHHC type) family protein O.I. H.G. S.X.
0.10 8.4 0.95 Contig10536_at Contig10536 - - 3e-2 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) O.I. H.G. S.X.
0.09 7.4 0.94 Contig14516_at Contig14516 glutathione synthetase - 3e-2 At5g27380 GSH2 (GLUTATHIONE SYNTHETASE 2) O.I. H.G. S.X.
0.07 5.8 0.95 Contig3263_at Contig3263 - - 9e-38 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.1 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.7 98.9 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
5.2 97.4 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.2 96.3 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g26560, orthologous to the query gene, Contig2350_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g26560 839196 BGLU40 (BETA GLUCOSIDASE 40) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA O.I. H.G. S.X.
0.22 17.5 At5g57030 835806 LUT2 (LUTEIN DEFICIENT 2) Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase O.I. H.G. S.X.
0.07 1.9 At3g01180 820294 AtSS2 (starch synthase 2) F:transferase activity, transferring glycosyl groups;P:cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process;C:chloroplast;OPBMFAV O.I. H.G. S.X.
0.07 1.9 At4g34240 829573 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1) Aldehyde dehydrogenase induced by ABA and dehydration O.I. H.G. S.X.
0.06 1.4 At5g17230 831587 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase Encodes phytoene synthase. O.I. H.G. S.X.
0.05 1.1 At5g09870 830847 CESA5 (CELLULOSE SYNTHASE 5) Encodes a cellulose synthase isomer, related to CESA6. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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