Co-expression analysis

Gene ID Contig2350_at
Gene name
Homology with ArabidopsisSimilar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=8e-1)
Module size 7 genes
NF 0.17
%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.80.93Contig2350_atContig2350--8e-1At1g26560BGLU40 (BETA GLUCOSIDASE 40)O.I.H.G.S.X.
0.3342.60.95Contig9550_atContig9550--3e-1At4g33690unknown proteinO.I.H.G.S.X.
0.1818.20.94Contig7620_atContig7620--1e-11At2g01060myb family transcription factorO.I.H.G.S.X.
0.1311.60.94Contig3847_atContig3847--4e-9At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.108.40.95Contig10536_atContig10536--3e-2At2g18250ATCOAD (4-phosphopantetheine adenylyltransferase)O.I.H.G.S.X.
0.097.40.94Contig14516_atContig14516glutathione synthetase-3e-2At5g27380GSH2 (GLUTATHIONE SYNTHETASE 2)O.I.H.G.S.X.
0.075.80.95Contig3263_atContig3263--9e-38At4g20360ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.1GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.297.4GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.296.3GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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