Co-expression analysis

Gene ID	Contig234_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59690: histone H4 (HF=3e-20)
Module size	27 genes
NF	0.40
%ile	55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.90	Contig234_s_at	Contig234	-	-	3e-20	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.93	Contig20324_at	Contig20324	-	-	4e+0	At4g16980	arabinogalactan-protein family	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig8406_at	Contig8406	-	-	4e-2	At3g10040	transcription factor	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig17239_at	Contig17239	-	-	5e+0	At1g55260	lipid binding	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig8375_at	Contig8375	-	-	1e-37	At3g23300	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.93	Contig11085_at	Contig11085	-	-	2e-6	At2g18290	anaphase-promoting complex, subunit 10 family / APC10 family	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig2430_at	Contig2430	-	-	2e-1	At2g45930	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.94	Contig12023_at	Contig12023	-	-	9e-16	At2g22125	binding	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig10941_at	Contig10941	-	-	2e-1	At3g48340	cysteine-type endopeptidase/ cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig16883_at	Contig16883	-	-	8e+0	Atmg00630	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.93	Contig15649_at	Contig15649	-	-	1e+1	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig12779_at	Contig12779	-	-	2e-2	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig10315_at	Contig10315	-	-	1e+0	At4g24015	zinc finger (RING-H2 type) protein-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig9446_at	Contig9446	-	-	1e-11	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig8440_at	Contig8440	-	-	5e-1	At1g09155	AtPP2-B15 (Phloem protein 2-B15)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig15934_at	Contig15934	-	-	1e+0	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig15548_at	Contig15548	-	-	2e-7	At2g38000	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.92	Contig11699_at	Contig11699	-	-	2e-3	At5g05600	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig14143_s_at	Contig14143	-	-	2e-2	At3g19900	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig9868_at	Contig9868	-	-	1e-18	At2g36895	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig20663_at	Contig20663	-	-	5e-1	Atmg01310	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	Contig12841_at	Contig12841	-	-	3e-5	At1g15140	oxidoreductase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig5574_at	Contig5574	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig7569_at	Contig7569	-	-	9e-7	At1g16190	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.9	95.8	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.5	95.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.5	91.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.3	90.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.3	90.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM311261	kara_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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