Co-expression analysis

Gene ID	Contig23462_at
Gene name
Homology with Arabidopsis	Similar to At5g43770: proline-rich family protein (HF=5e+0)
Module size	17 genes
NF	0.43
%ile	60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	0.94	Contig23462_at	Contig23462	-	-	5e+0	At5g43770	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	Contig7584_at	Contig7584	-	-	2e+0	At1g23660	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig7322_at	Contig7322	-	-	2e-3	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig11131_s_at	Contig11131	-	-	6e-25	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig16048_at	Contig16048	-	-	8e-1	At1g24880	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	HU02E04u_s_at	HU02E04u	-	-	8e-5	At3g27720	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig16867_at	Contig16867	-	-	7e-9	At3g02690	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig8299_at	Contig8299	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig8279_at	Contig8279	-	-	7e-18	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig20845_at	Contig20845	-	-	5e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig15157_at	Contig15157	-	-	1e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig9821_at	Contig9821	UDP-D-xylose epimerase 3	-	6e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig3680_s_at	Contig3680	-	-	3e-13	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage