Co-expression analysis

Gene ID Contig2343_s_at
Gene name
Homology with ArabidopsisSimilar to At5g26010: catalytic/ protein serine/threonine phosphatase (HF=1e+0)
Module size 6 genes
NF 0.56
%ile 77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.97Contig2343_s_atContig2343--1e+0At5g26010catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.6077.30.97Contig11477_atContig11477--8e-5At1g79040PSBR (photosystem II subunit R)O.I.H.G.S.X.
0.5066.90.96Contig10661_atContig10661--2e+0At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.5066.90.97Contig7360_atContig7360--3e+0At4g19620unknown proteinO.I.H.G.S.X.
0.4458.90.97Contig19949_atContig19949--7e+0At3g02620acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.3950.50.96Contig1512_atContig1512--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.299.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.298.7GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.597.6GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.497.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
5.297.4GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
4.696.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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