Co-expression analysis

Gene ID	Contig23437_at
Gene name
Homology with Arabidopsis	Similar to At5g66870: ASL1 (HF=2e+0)
Module size	9 genes
NF	0.27
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.93	Contig23437_at	Contig23437	-	-	2e+0	At5g66870	ASL1	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	HT06B11r_at	HT06B11r	-	-	3e-1	At3g48344	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HX09K05r_at	HX09K05r	-	-	4e+0	At2g20080	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	EBca01_SQ004_P03_x_at	EBca01_SQ004_P03	-	-	2e+0	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	EBca01_SQ004_P03_at	EBca01_SQ004_P03	-	-	2e+0	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	HA30O17r_at	HA30O17r	-	-	9e-10	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	HM11C20r_at	HM11C20r	-	-	4e+0	At3g55890	yippee family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	HT08O05u_at	HT08O05u	-	-	7e-1	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	HC113H04_SK_at	HC113H04_SK	-	-	3e+0	At2g42410	ZFP11 (ZINC FINGER PROTEIN 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.2	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.2	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.1	94.1	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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