Co-expression analysis

Gene ID	Contig23389_at
Gene name
Homology with Arabidopsis	Similar to At2g22370: unknown protein (HF=2e-2)
Module size	8 genes
NF	0.31
%ile	41.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.93	Contig23389_at	Contig23389	-	-	2e-2	At2g22370	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.94	Contig7556_s_at	Contig7556	-	-	5e-1	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig12867_at	Contig12867	-	-	9e-41	At1g34430	EMB3003 (embryo defective 3003)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	HA03M05u_s_at	HA03M05u	-	-	2e-7	At3g20390	endoribonuclease L-PSP family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig4672_at	Contig4672	-	-	4e-71	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.93	Contig1012_s_at	Contig1012	-	-	2e-43	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.93	Contig22848_at	Contig22848	-	-	3e-1	At3g59640	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.4	99.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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