Co-expression analysis

Gene ID	Contig23381_at
Gene name
Homology with Arabidopsis	Similar to At3g05327: - (HF=2e+0)
Module size	6 genes
NF	0.36
%ile	49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig23381_at	Contig23381	-	-	2e+0	At3g05327	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig7958_at	Contig7958	-	-	7e-8	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	HVSMEk0007B01r2_s_at	HVSMEk0007B01r2	-	-	6e+0	At1g12030	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig4090_s_at	Contig4090	triticain beta 2	-	4e-7	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig7830_s_at	Contig7830	-	-	3e-22	At2g02860	SUT2 (SUCROSE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig3882_s_at	Contig3882	-	-	2e-68	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.2	99.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.9	99.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.3	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.5	99.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.6	99.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
9.6	99.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.0	97.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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