Co-expression analysis

Gene ID	Contig23379_at
Gene name
Homology with Arabidopsis	Similar to At2g02020: proton-dependent oligopeptide transport (POT) family protein (HF=9e-2)
Module size	6 genes
NF	0.30
%ile	38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig23379_at	Contig23379	-	-	9e-2	At2g02020	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig5121_s_at	Contig5121	-	-	1e+1	At5g47060	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig8811_at	Contig8811	-	-	2e+0	At5g26170	WRKY50	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.96	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.1	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.5	98.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
8.3	98.8	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
8.0	98.7	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.8	98.6	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9	98.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
6.8	98.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.7	97.7	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.7	97.7	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage