Co-expression analysis

Gene ID	Contig23245_at
Gene name
Homology with Arabidopsis	Similar to At5g60550: GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) (HF=5e-4)
Module size	6 genes
NF	0.56
%ile	77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig23245_at	Contig23245	-	-	5e-4	At5g60550	GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig7809_at	Contig7809	-	-	9e-5	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	HZ52M04r_s_at	HZ52M04r	-	-	4e+0	At2g16385	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig20611_at	Contig20611	-	-	2e+0	At5g49130	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig19727_at	Contig19727	-	-	1e+0	At5g51790	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HV_CEa0008P09r2_s_at	HV_CEa0008P09r2	-	-	1e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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