Co-expression analysis

Gene ID Contig23245_at
Gene name
Homology with ArabidopsisSimilar to At5g60550: GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) (HF=5e-4)
Module size 6 genes
NF 0.56
%ile 77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.94Contig23245_atContig23245--5e-4At5g60550GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)O.I.H.G.S.X.
0.6784.70.94Contig7809_atContig7809--9e-5At5g46030unknown proteinO.I.H.G.S.X.
0.6077.30.95HZ52M04r_s_atHZ52M04r--4e+0At2g16385unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig20611_atContig20611--2e+0At5g49130MATE efflux family proteinO.I.H.G.S.X.
0.3545.10.95Contig19727_atContig19727--1e+0At5g51790basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2528.90.95HV_CEa0008P09r2_s_atHV_CEa0008P09r2--1e+0At5g35520MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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