Co-expression analysis

Gene ID Contig23232_at
Gene name
Homology with ArabidopsisSimilar to At1g21910: AP2 domain-containing transcription factor family protein (HF=2e-1)
Module size 6 genes
NF 0.01
%ile 1.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.70Contig23232_atContig23232--2e-1At1g21910AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.2122.60.78AFFX-TrpnX-M_atAFFX-TrpnX-M---O.I.H.G.S.X.
0.043.40.88Contig19333_atContig19333--6e+0At1g20350ATTIM17-1O.I.H.G.S.X.
0.011.10.88HX03D06u_atHX03D06u--5e-3At2g37320pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.011.10.88HD07I22r_s_atHD07I22r--5e+0At4g21090adrenodoxin-like ferredoxin 1O.I.H.G.S.X.
-0.20.88HVSMEn0001D07r2_atHVSMEn0001D07r2--6e-1At2g25260unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.198.9GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.898.6GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
7.598.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
7.398.5GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.698.2GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.597.6GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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