Co-expression analysis

Gene ID	Contig23232_at
Gene name
Homology with Arabidopsis	Similar to At1g21910: AP2 domain-containing transcription factor family protein (HF=2e-1)
Module size	6 genes
NF	0.01
%ile	1.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.70	Contig23232_at	Contig23232	-	-	2e-1	At1g21910	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.78	AFFX-TrpnX-M_at	AFFX-TrpnX-M	-	-			-	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.88	Contig19333_at	Contig19333	-	-	6e+0	At1g20350	ATTIM17-1	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.88	HX03D06u_at	HX03D06u	-	-	5e-3	At2g37320	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.88	HD07I22r_s_at	HD07I22r	-	-	5e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
-	0.2	0.88	HVSMEn0001D07r2_at	HVSMEn0001D07r2	-	-	6e-1	At2g25260	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
7.5	98.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.6	98.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.5	97.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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