Co-expression analysis

Gene ID Contig23200_at
Gene name
Homology with ArabidopsisSimilar to At3g20810: transcription factor jumonji (jmjC) domain-containing protein (HF=6e-6)
Module size 6 genes
NF 0.56
%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.91Contig23200_atContig23200--6e-6At3g20810transcription factor jumonji (jmjC) domain-containing proteinO.I.H.G.S.X.
0.6784.70.91Contig23202_atContig23202--3e-5At5g09320VPS9BO.I.H.G.S.X.
0.5774.90.90Contig13749_x_atContig13749--1e+0At1g64295F-box family protein-relatedO.I.H.G.S.X.
0.5369.70.91Contig22909_atContig22909--3e-2At1g20550unknown proteinO.I.H.G.S.X.
0.4053.10.91HG01J06u_atHG01J06u--5e+0At4g24600unknown proteinO.I.H.G.S.X.
0.3647.10.91Contig2_s_atContig2plasma membrane proton ATPase-3e-4At2g07560AHA6 (Arabidopsis H(+)-ATPase 6)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5369.70.87Contig19614_atContig19614--2e+0At5g57570-O.I.H.G.S.X.
0.5066.90.90Contig25340_atContig25340--8e-36At1g31800CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)O.I.H.G.S.X.
0.4762.20.85rbaal5k15_s_atrbaal5k15--2e+0At4g39745hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4458.90.89Contig13749_atContig13749--1e+0At1g64295F-box family protein-relatedO.I.H.G.S.X.
0.4458.90.89Contig699_atContig699--1e+0At3g07425unknown proteinO.I.H.G.S.X.
0.4356.40.87Contig25401_s_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.3849.50.87Contig26424_atContig26424--4e+0At5g13240transcription regulatorO.I.H.G.S.X.
0.3849.50.87HVSMEn0020I19r2_atHVSMEn0020I19r2--2e+0At1g72290trypsin and protease inhibitor family protein / Kunitz family proteinO.I.H.G.S.X.
0.3849.50.89Contig13693_x_atContig13693--1e+0At2g20835unknown proteinO.I.H.G.S.X.
0.3647.10.84Contig10481_atContig10481--7e+0At5g17262unknown proteinO.I.H.G.S.X.
0.3647.10.88Contig13519_atContig13519--7e-1At3g14750unknown proteinO.I.H.G.S.X.
0.3647.10.81Contig13517_s_atContig13517--5e+0At5g55893unknown proteinO.I.H.G.S.X.
0.3647.10.86Contig13518_atContig13518--3e-12At5g20490XIKO.I.H.G.S.X.
0.3545.10.83Contig7441_atContig7441--7e-39At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)O.I.H.G.S.X.
0.2935.50.86HVSMEl0006D20f2_atHVSMEl0006D20f2--1e-1Atmg00890-O.I.H.G.S.X.
0.2935.50.82HV14J05u_x_atHV14J05u--6e+0At2g41430ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)O.I.H.G.S.X.
0.2935.50.88Contig26421_atContig26421--2e+0At4g13150unknown proteinO.I.H.G.S.X.
0.2935.50.88Contig19449_atContig19449--2e+0At4g10420-O.I.H.G.S.X.
0.2935.50.90Contig2147_atContig2147--4e+0At5g59810SBT5.4O.I.H.G.S.X.
0.2835.50.88HV10K18u_atHV10K18u--1e+1At5g33390glycine-rich proteinO.I.H.G.S.X.
0.2732.10.88Contig12564_atContig12564--4e-1At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.
0.2732.10.92Contig49_x_atContig49--4e+0At3g05920heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2630.40.80Contig23072_atContig23072--2e+0At2g18910hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2528.90.85Contig15252_atContig15252--2e-2At5g27690heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2528.90.86Contig670_atContig670--7e-1At4g35725unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.599.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.499.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.499.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.998.7GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.797.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.396.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.096.0GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.895.7GSM372991genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM372995genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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