CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig23200_at

Gene name
Homology with Arabidopsis Similar to At3g20810: transcription factor jumonji (jmjC) domain-containing protein (HF=6e-6)

Module size 6 genes

NF 0.56

%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.91 Contig23200_at Contig23200 - - 6e-6 At3g20810 transcription factor jumonji (jmjC) domain-containing protein O.I. H.G. S.X.
0.67 84.7 0.91 Contig23202_at Contig23202 - - 3e-5 At5g09320 VPS9B O.I. H.G. S.X.
0.57 74.9 0.90 Contig13749_x_at Contig13749 - - 1e+0 At1g64295 F-box family protein-related O.I. H.G. S.X.
0.53 69.7 0.91 Contig22909_at Contig22909 - - 3e-2 At1g20550 unknown protein O.I. H.G. S.X.
0.40 53.1 0.91 HG01J06u_at HG01J06u - - 5e+0 At4g24600 unknown protein O.I. H.G. S.X.
0.36 47.1 0.91 Contig2_s_at Contig2 plasma membrane proton ATPase - 3e-4 At2g07560 AHA6 (Arabidopsis H(+)-ATPase 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.5 99.8 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.4 99.4 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9 98.7 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.7 97.7 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.3 96.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.0 96.0 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8 95.7 GSM372991 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM372995 genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the maize gene, Zm.19120.1.A1_at, orthologous to the query gene, Contig23200_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.1 Zm.19120.1.A1_at At3g20810 hypothetical protein LOC100272621 - 4e-7 At3g20810 transcription factor jumonji (jmjC) domain-containing protein O.I. H.G. S.X.
0.73 89.9 Zm.19096.1.A1_at At3g20810 - - 4e-1 At1g25340 MYB116 (myb domain protein 116) O.I. H.G. S.X.
0.67 85.8 Zm.2169.1.A1_at At3g20810 - - 2e+0 At3g10250 unknown protein O.I. H.G. S.X.
0.67 85.8 Zm.2776.1.A1_at At3g20810 asparagine synthase family protein - 2e+0 At2g03667 asparagine synthase (glutamine-hydrolyzing) O.I. H.G. S.X.
0.46 58.4 Zm.2811.1.A1_at At3g20810 hypothetical protein LOC100279769 - 1e+0 At4g05100 AtMYB74 (myb domain protein 74) O.I. H.G. S.X.
0.40 48.5 Zm.2076.2.A1_at At3g20810 hypothetical protein LOC100194265 - 2e-3 At3g04230 40S ribosomal protein S16 (RPS16B) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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