Co-expression analysis

Gene ID	Contig23200_at
Gene name
Homology with Arabidopsis	Similar to At3g20810: transcription factor jumonji (jmjC) domain-containing protein (HF=6e-6)
Module size	6 genes
NF	0.56
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.91	Contig23200_at	Contig23200	-	-	6e-6	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig23202_at	Contig23202	-	-	3e-5	At5g09320	VPS9B	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.90	Contig13749_x_at	Contig13749	-	-	1e+0	At1g64295	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig22909_at	Contig22909	-	-	3e-2	At1g20550	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	HG01J06u_at	HG01J06u	-	-	5e+0	At4g24600	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.91	Contig2_s_at	Contig2	plasma membrane proton ATPase	-	3e-4	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.5	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.4	99.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9	98.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1611621_at, orthologous to the query gene, Contig23200_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	1611621_at	At3g20810	hypothetical protein LOC100262627	-	2e+1	At5g41400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1612777_at	At3g20810	hypothetical protein LOC100262144	-	2e-12	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611177_at	At3g20810	hypothetical protein LOC100263874	-	2e-8	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1610924_at	At3g20810	hypothetical protein LOC100248224	-	1e+0	At1g35410	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	1608685_at	At3g20810	hypothetical protein LOC100244012	-	2e+0	At3g03460	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1620189_at	At3g20810	hypothetical protein LOC100265424	-	6e-30	At3g08840	D-alanine--D-alanine ligase family	O.I.	H.G.	S.X.	Please select
0.24	28.7	1614010_at	At3g20810	hypothetical LOC100246762	-	4e+0	At1g60390	BURP domain-containing protein / polygalacturonase, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1619919_at	At3g20810	-	-	4e-1	At5g48880	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1607816_at	At3g20810	hypothetical protein LOC100248686	-	1e-28	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612148_at	At3g20810	hypothetical protein LOC100252593	-	1e+0	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1609735_at	At3g20810	hypothetical protein LOC100249713	-	1e-75	At1g50030	TOR (TARGET OF RAPAMYCIN)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1609115_at	At3g20810	hypothetical LOC100248456	-	7e-1	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	1621625_s_at	At3g20810	hypothetical protein LOC100264067	-	5e-10	At4g22360	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1610681_at	At3g20810	hypothetical protein LOC100258707	-	9e-1	At3g15870	oxidoreductase	O.I.	H.G.	S.X.	Please select
0.17	18.2	1613029_at	At3g20810	hypothetical protein LOC100246903	-	1e+0	At2g32340	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	1607130_at	At3g20810	-	-	3e-1	At5g67270	ATEB1C (microtubule end binding protein 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1618544_at	At3g20810	similar to pumilio domain-containing protein PPD1	-	4e-20	At4g25880	APUM6 (Arabidopsis Pumilio 6)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1617566_at	At3g20810	hypothetical protein LOC100247823	-	1e+0	At3g17310	methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1613607_at	At3g20810	hypothetical protein LOC100242078	-	2e+0	At4g09180	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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