Co-expression analysis

Gene ID	Contig23200_at
Gene name
Homology with Arabidopsis	Similar to At3g20810: transcription factor jumonji (jmjC) domain-containing protein (HF=6e-6)
Module size	6 genes
NF	0.56
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.91	Contig23200_at	Contig23200	-	-	6e-6	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig23202_at	Contig23202	-	-	3e-5	At5g09320	VPS9B	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.90	Contig13749_x_at	Contig13749	-	-	1e+0	At1g64295	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig22909_at	Contig22909	-	-	3e-2	At1g20550	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	HG01J06u_at	HG01J06u	-	-	5e+0	At4g24600	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.91	Contig2_s_at	Contig2	plasma membrane proton ATPase	-	3e-4	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.5	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.4	99.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9	98.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.15579.1.S1_a_at, orthologous to the query gene, Contig23200_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.15579.1.S1_a_at	At3g20810	-	-	2e-3	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.26903.1.S1_a_at	At3g20810	-	-	4e-24	At2g25570	binding	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.65865.1.A1_at	At3g20810	-	-	3e+0	At1g78170	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.7457.1.S1_at	At3g20810	-	-	3e+0	Atmg01260	-	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.25265.1.S1_at	At3g20810	-	-	6e-7	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.5043.1.S1_at	At3g20810	-	-	5e-9	At1g32130	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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