Co-expression analysis

Gene ID Contig23200_at
Gene name
Homology with ArabidopsisSimilar to At3g20810: transcription factor jumonji (jmjC) domain-containing protein (HF=6e-6)
Module size 6 genes
NF 0.56
%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.91Contig23200_atContig23200--6e-6At3g20810transcription factor jumonji (jmjC) domain-containing proteinO.I.H.G.S.X.
0.5774.90.90Contig13749_x_atContig13749--1e+0At1g64295F-box family protein-relatedO.I.H.G.S.X.
0.5369.70.91Contig22909_atContig22909--3e-2At1g20550unknown proteinO.I.H.G.S.X.
0.4053.10.91HG01J06u_atHG01J06u--5e+0At4g24600unknown proteinO.I.H.G.S.X.
0.3647.10.91Contig2_s_atContig2plasma membrane proton ATPase-3e-4At2g07560AHA6 (Arabidopsis H(+)-ATPase 6)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.599.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.499.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.499.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.998.7GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.797.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.396.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.096.0GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.895.7GSM372991genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM372995genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g20810, orthologous to the query gene, Contig23200_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.9998.1At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.H.G.S.X.
0.4050.8At5g60100836132APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.O.I.H.G.S.X.
0.3338.1At5g61380836259TOC1 (TIMING OF CAB EXPRESSION 1)Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.O.I.H.G.S.X.
0.2930.3At1g17665838343unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMFO.I.H.G.S.X.
0.2726.2At2g22450816777riboflavin biosynthesis protein, putativeF:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAPO.I.H.G.S.X.
0.2115.8At5g39410833937binding / catalyticF:binding, catalytic activity;P:metabolic process;C:mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope;OBMFPAO.I.H.G.S.X.
0.2014.4At5g26570832706ATGWD3chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.O.I.H.G.S.X.
0.2014.4At1g04620839472coenzyme F420 hydrogenase family / dehydrogenase, beta subunit familyF:coenzyme F420 hydrogenase activity;P:biological_process unknown;C:chloroplast;BAOPO.I.H.G.S.X.
0.2014.4At2g25730817114unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.1912.7At2g36390818212SBE2.1 (starch branching enzyme 2.1)Encodes a starch branching enzyme (EC. similar to SBE2 from maize and rice. Expressed throughout plant tissues.O.I.H.G.S.X.
0.157.8At5g42750834284BKI1 (BRI1 kinase inhibitor 1)Encodes a plasma-membrane associated phosphoprotein that interacts directly with the kinase domain of BRI1. It interferes with the interaction between BRI1 with its signalling partner, the plasma membrane localised LRR-receptor kinase BAK1.O.I.H.G.S.X.
0.146.8At1g53450841780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.146.8At4g33700829512CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOMPFAO.I.H.G.S.X.
0.146.8At2g25930817134ELF3 (EARLY FLOWERING 3)Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions.O.I.H.G.S.X.
0.146.8At4g11410826745short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.H.G.S.X.
0.135.8At4g18240827550ATSS4F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAVO.I.H.G.S.X.
0.135.8At4g15840827265protein bindingF:protein binding;P:biological_process unknown;C:unknown;MPFOO.I.H.G.S.X.
0.135.8At3g46590823812TRFL1 (TRF-LIKE 1)Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.O.I.H.G.S.X.
0.124.9At1g13640837925phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.124.9At4g38520830009protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.H.G.S.X.
0.124.9At1g28320839726DEG15Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.O.I.H.G.S.X.
0.124.9At5g11150830984ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.S.X.
0.124.9At2g23460816878XLG1 (EXTRA-LARGE G-PROTEIN 1)encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.O.I.H.G.S.X.
0.124.9At4g00450827954CRP (CRYPTIC PRECOCIOUS)A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.O.I.H.G.S.X.
0.124.9At5g02250830864EMB2730 (EMBRYO DEFECTIVE 2730)Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.O.I.H.G.S.X.
0.114.1At4g13100826924zinc finger (C3HC4-type RING finger) family proteinF:protein binding, calmodulin binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.114.1At2g47390819352serine-type endopeptidase/ serine-type peptidaseF:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast stroma, chloroplast;BOMAPFO.I.H.G.S.X.
0.114.1At5g57850835895aminotransferase class IV family proteinF:4-amino-4-deoxychorismate lyase activity, catalytic activity;P:tetrahydrofolate biosynthetic process;C:chloroplast;BOAPFO.I.H.G.S.X.
0.114.1At3g22380821807TIC (TIME FOR COFFEE)Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses. Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night. TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action.O.I.H.G.S.X.
0.114.1At5g63860836506UVR8 (UVB-RESISTANCE 8)UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.O.I.H.G.S.X.
0.114.1At2g47850819397zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFOBO.I.H.G.S.X.
0.114.1At5g60710836192zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;BMOPFAO.I.H.G.S.X.
0.103.4At2g31510817709IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPVO.I.H.G.S.X.
0.103.4At2g38440818425SCAR2 (SCAR HOMOLOG 2)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.O.I.H.G.S.X.
0.103.4At2g40070818595-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAO.I.H.G.S.X.
0.103.4At4g30310829154ribitol kinase, putativeF:carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor;P:carbohydrate metabolic process;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.103.4At3g06440819820galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFO.I.H.G.S.X.
0.103.4At4g38090829965unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFPO.I.H.G.S.X.
0.092.8At3g56750824842unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;POO.I.H.G.S.X.
0.092.8At3g17750821043protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAO.I.H.G.S.X.
0.092.8At4g02680828205EOL1 (ETO1-LIKE 1)Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5.O.I.H.G.S.X.
0.092.8At4g31050829232lipoyltransferase (LIP2p)F:lipoyltransferase activity, catalytic activity;P:protein modification process, lipoate biosynthetic process;C:cellular_component unknown;OBFMPAO.I.H.G.S.X.
0.092.8At2g26350817175PEX10Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.O.I.H.G.S.X.
0.092.8At1g22620838868ATSAC1 (suppressor of actin 1)SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.O.I.H.G.S.X.
0.092.8At1g73380843673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.092.8At3g10410820205scpl49 (serine carboxypeptidase-like 49)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.H.G.S.X.
0.092.8At5g15680831422bindingF:binding;P:biological_process unknown;C:plasma membrane, membrane;MFPOO.I.H.G.S.X.
0.092.8At1g78010844136tRNA modification GTPase, putativeF:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFPO.I.H.G.S.X.
0.092.8At3g47860823942apolipoprotein D-relatedF:transporter activity, binding;P:transport;C:chloroplast thylakoid membrane, chloroplast;MPOBO.I.H.G.S.X.
0.082.3At1g04950839370TAF6 (TBP-ASSOCIATED FACTOR 6)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.O.I.H.G.S.X.
0.082.3At1g63770842681peptidase M1 family proteinF:metallopeptidase activity, zinc ion binding;P:response to cadmium ion, proteolysis;C:in 6 components;BOMFPAO.I.H.G.S.X.
0.082.3At5g64280836549DiT2.2 (dicarboxylate transporter 2.2)F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMVO.I.H.G.S.X.
0.082.3At3g11540820327SPY (SPINDLY)Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.O.I.H.G.S.X.
0.082.3At3g29270822584ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.082.3At1g53230841756TCP3Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.H.G.S.X.
0.082.3At5g37930833772seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:intracellular, nucleus;MPOFVO.I.H.G.S.X.
0.082.3At3g22190821783IQD5 (IQ-domain 5)F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOFO.I.H.G.S.X.
0.082.3At4g33480829485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFO.I.H.G.S.X.
0.071.9At5g185252745988ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:CUL4 RING ubiquitin ligase complex;BMFOPAO.I.H.G.S.X.
0.071.9At4g02510827934TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane.O.I.H.G.S.X.
0.071.9At5g63420836461emb2746 (embryo defective 2746)F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFVO.I.H.G.S.X.
0.071.9At3g05220819686heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;MOBPFVAO.I.H.G.S.X.
0.071.9At3g13670820572protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAO.I.H.G.S.X.
0.061.4At1g58110842178bZIP family transcription factorF:transcription factor activity, sequence-specific DNA binding, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PMOFBO.I.H.G.S.X.
0.061.4At4g33510829489DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)Enzyme catalyzing the first committed step in aromatic amino acid biosynthesisO.I.H.G.S.X.
0.061.4At4g38640830020choline transporter-relatedF:unknown;P:unknown;C:unknown;MOFPABO.I.H.G.S.X.
0.061.4At1g49480841372RTV1 (related to vernalization1 1)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PMO.I.H.G.S.X.
0.061.4At1g08980837418AMI1 (AMIDASE 1)Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.O.I.H.G.S.X.
0.051.1At1g53280841762DJ-1 family proteinF:unknown;P:biological_process unknown;C:chloroplast;BMOAPFO.I.H.G.S.X.
0.051.1At1g09795837509ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesisO.I.H.G.S.X.
0.051.1At1g48210841241serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.051.1At5g489608349545' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBOO.I.H.G.S.X.
0.051.1At5g36170833614HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109)Required for normal processing of polycistronic plastidial transcriptsO.I.H.G.S.X.
0.051.1At1g78890844226unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.051.1At2g16640816165TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)F:transmembrane receptor activity;P:protein targeting to chloroplast;C:chloroplast outer membrane, membrane;OMFBPVAO.I.H.G.S.X.
0.051.1At5g06130830500chaperone protein dnaJ-relatedF:unknown;P:unknown;C:unknown;PBOO.I.H.G.S.X.
0.051.1At5g37310833705-F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plant-type cell wall;MPOFO.I.H.G.S.X.
0.051.1At1g21600838761PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.H.G.S.X.
0.051.1At2g18960816413AHA1 (ARABIDOPSIS H+ ATPASE 1)Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.O.I.H.G.S.X.
0.051.1At3g58680825037MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.O.I.H.G.S.X.
0.040.9At5g08100830704L-asparaginase / L-asparagine amidohydrolaseF:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.040.9At5g42920834304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.

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