Co-expression analysis

Gene ID	Contig23176_at
Gene name
Homology with Arabidopsis	Similar to At1g16430: surfeit locus protein 5 family protein / SURF5 family protein (HF=9e-1)
Module size	6 genes
NF	0.05
%ile	6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.92	Contig23176_at	Contig23176	-	-	9e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig14251_at	Contig14251	-	-	4e+0	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	rbasd21g03_s_at	rbasd21g03	-	-	8e+0	At4g39900	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	rbags12j06_s_at	rbags12j06	-	-	4e+0	At3g48880	F-box family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.93	Contig18078_at	Contig18078	-	-	1e+0	At1g66180	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.93	Contig15978_at	Contig15978	-	-	4e-1	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

A co-expression module including the wheat gene, Ta.16649.1.S1_at, orthologous to the query gene, Contig23176_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.1	Ta.16649.1.S1_at	At1g16430	-	-	2e+0	At5g59616	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.9238.1.S1_a_at	At1g16430	-	-	3e+0	At3g51580	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.22604.1.S1_at	At1g16430	-	-	2e-1	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.5700.2.S1_a_at	At1g16430	-	-	2e-3	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.10929.1.S1_at	At1g16430	-	-	9e-5	At3g56440	AtATG18d	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.7414.1.S1_at	At1g16430	-	-	1e+0	At4g15510	photosystem II reaction center PsbP family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.370.1.S1_at	At1g16430	-	-	2e+0	At3g21400	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.1806.1.S1_at	At1g16430	-	-	9e-11	At4g32760	protein transporter	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.8631.1.S1_at	At1g16430	-	-	8e-28	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage