CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig23176_at

Gene name
Homology with Arabidopsis Similar to At1g16430: surfeit locus protein 5 family protein / SURF5 family protein (HF=9e-1)

Module size 6 genes

NF 0.05

%ile 6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.92 Contig23176_at Contig23176 - - 9e-1 At1g16430 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.
0.10 8.4 0.95 Contig14251_at Contig14251 - - 4e+0 At2g46170 reticulon family protein (RTNLB5) O.I. H.G. S.X.
0.08 6.5 0.93 rbasd21g03_s_at rbasd21g03 - - 8e+0 At4g39900 unknown protein O.I. H.G. S.X.
0.06 4.8 0.95 rbags12j06_s_at rbags12j06 - - 4e+0 At3g48880 F-box family protein O.I. H.G. S.X.
0.03 2.6 0.93 Contig18078_at Contig18078 - - 1e+0 At1g66180 aspartyl protease family protein O.I. H.G. S.X.
0.02 1.8 0.93 Contig15978_at Contig15978 - - 4e-1 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	94.0	0.92	Contig23176_at	Contig23176	-	-	9e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.
0.10	8.4	0.95	Contig14251_at	Contig14251	-	-	4e+0	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.
0.08	6.5	0.93	rbasd21g03_s_at	rbasd21g03	-	-	8e+0	At4g39900	unknown protein	O.I.	H.G.	S.X.
0.06	4.8	0.95	rbags12j06_s_at	rbags12j06	-	-	4e+0	At3g48880	F-box family protein	O.I.	H.G.	S.X.
0.03	2.6	0.93	Contig18078_at	Contig18078	-	-	1e+0	At1g66180	aspartyl protease family protein	O.I.	H.G.	S.X.
0.02	1.8	0.93	Contig15978_at	Contig15978	-	-	4e-1	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.0 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4 96.6 GSM146380 Maythorpe shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3 96.4 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
4.3 96.4 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.3 96.4 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
4.3 96.4 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
4.0 96.0 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
4.0 96.0 GSM440958 Control lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM398253 Martin_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6 95.3 GSM311263 kara_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.8	97.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

A co-expression module including the rice gene, Os09g0530900, orthologous to the query gene, Contig23176_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 Os09g0530900 At1g16430 - Oxydoreductase-like protein 1e+0 At1g55780 metal ion binding O.I. H.G. S.X.
0.41 52.4 Os02g0792900 At1g16430 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.41 52.4 Os07g0512200 At1g16430 - Symbiosis-related like protein 2e-40 At4g21980 APG8A (AUTOPHAGY 8A) O.I. H.G. S.X.
0.38 46.9 Os06g0342200 At1g16430 - Eukaryotic translation initiation factor 1A(EIF-1A) (EIF-4C) 1e-7 At5g35680 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.36 44.0 Os03g0308000 At1g16430 - Ubiquitin-conjugating enzymes domain containingprotein 5e-11 At3g17000 UBC32 (ubiquitin-conjugating enzyme 32) O.I. H.G. S.X.
0.36 44.0 Os01g0930400 At1g16430 - K+ potassium transporter family protein 4e-7 At4g13420 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) O.I. H.G. S.X.
0.33 38.8 Os05g0182700 At1g16430 - Conserved hypothetical protein 5e-5 At1g27000 bZIP family transcription factor O.I. H.G. S.X.
0.33 38.8 Os02g0826400 At1g16430 - Conserved hypothetical protein 7e-2 At4g24026 unknown protein O.I. H.G. S.X.
0.32 36.3 Os01g0558600 At1g16430 - Ras-related protein RIC1 3e-30 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) O.I. H.G. S.X.
0.31 34.5 Os01g0813400 At1g16430 - ADP-ribosylation factor 2e-96 At2g47170 ARF1A1C O.I. H.G. S.X.
0.30 32.7 Os02g0119400 At1g16430 - Syntaxin 52 (AtSYP52) 4e-11 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) O.I. H.G. S.X.
0.29 31.1 Os02g0184500 At1g16430 - - 7e-4 At5g32440 - O.I. H.G. S.X.
0.28 31.1 Os06g0681400 At1g16430 - Polyubiquitin 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.
0.26 25.6 Os07g0166800 At1g16430 - Rad6 (Ubiquitin carrier protein) 1e-29 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) O.I. H.G. S.X.
0.25 24.1 Os09g0567400 At1g16430 - Histidine-containing phosphotransfer protein 3e-2 At3g47130 F-box family protein-related O.I. H.G. S.X.
0.25 24.1 Os04g0548000 At1g16430 - Eukaryotic protein of unknown function DUF862family protein 1e-2 At2g25190 unknown protein O.I. H.G. S.X.
0.25 24.1 Os02g0823300 At1g16430 - Zn-finger, RING domain containing protein 2e-12 At5g04460 protein binding / zinc ion binding O.I. H.G. S.X.
0.24 22.4 Os11g0425600 At1g16430 - Four F5 protein family protein 5e+0 At5g42040 RPN12b (Regulatory Particle Non-ATPase 12b) O.I. H.G. S.X.
0.24 22.4 Os02g0535700 At1g16430 - Protein of unknown function DUF1022 family protein 4e-7 At5g22350 ELM1 (ELONGATED MITOCHONDRIA 1) O.I. H.G. S.X.
0.23 21.2 Os01g0731000 At1g16430 - Conserved hypothetical protein 6e-12 At1g16960 unknown protein O.I. H.G. S.X.
0.20 16.5 Os06g0714000 At1g16430 - Protein of unknown function UPF0183 family protein 1e-6 At3g51130 unknown protein O.I. H.G. S.X.
0.19 15.1 Os03g0655200 At1g16430 - Vesicle transport v-SNARE family protein 7e-10 At5g50440 MEMB12 (MEMBRIN 12) O.I. H.G. S.X.
0.18 13.7 Os03g0784900 At1g16430 - Conserved hypothetical protein 1e-1 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) O.I. H.G. S.X.
0.17 12.6 Os08g0440000 At1g16430 - Vesicle transport v-SNARE family protein 2e-3 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.17 12.6 Os02g0520800 At1g16430 - Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP) 5e-14 At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative O.I. H.G. S.X.
0.16 11.3 Os05g0516600 At1g16430 - Small GTP binding protein 1e-32 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) O.I. H.G. S.X.
0.14 9.3 Os04g0390000 At1g16430 - 2-oxoglutarate dehydrogenase, E1 component 6e-49 At5g65750 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative O.I. H.G. S.X.
0.13 8.2 Os05g0292200 At1g16430 - Transcription factor IIA large subunit (TFIIA-L1) 3e+0 At4g14315 unknown protein O.I. H.G. S.X.
0.10 5.7 Os06g0507400 At1g16430 - BTB/POZ domain containing protein 3e-10 At3g61600 ATPOB1 O.I. H.G. S.X.
0.09 4.9 Os03g0756400 At1g16430 - Conserved hypothetical protein 2e-4 At5g27210 - O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	Os09g0530900	At1g16430	-	Oxydoreductase-like protein	1e+0	At1g55780	metal ion binding	O.I.	H.G.	S.X.
0.41	52.4	Os02g0792900	At1g16430	-	TMS membrane protein/tumour differentiallyexpressed protein family protein	1e-15	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.
0.41	52.4	Os07g0512200	At1g16430	-	Symbiosis-related like protein	2e-40	At4g21980	APG8A (AUTOPHAGY 8A)	O.I.	H.G.	S.X.
0.38	46.9	Os06g0342200	At1g16430	-	Eukaryotic translation initiation factor 1A(EIF-1A) (EIF-4C)	1e-7	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.
0.36	44.0	Os03g0308000	At1g16430	-	Ubiquitin-conjugating enzymes domain containingprotein	5e-11	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.
0.36	44.0	Os01g0930400	At1g16430	-	K+ potassium transporter family protein	4e-7	At4g13420	HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)	O.I.	H.G.	S.X.
0.33	38.8	Os05g0182700	At1g16430	-	Conserved hypothetical protein	5e-5	At1g27000	bZIP family transcription factor	O.I.	H.G.	S.X.
0.33	38.8	Os02g0826400	At1g16430	-	Conserved hypothetical protein	7e-2	At4g24026	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	Os01g0558600	At1g16430	-	Ras-related protein RIC1	3e-30	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.
0.31	34.5	Os01g0813400	At1g16430	-	ADP-ribosylation factor	2e-96	At2g47170	ARF1A1C	O.I.	H.G.	S.X.
0.30	32.7	Os02g0119400	At1g16430	-	Syntaxin 52 (AtSYP52)	4e-11	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	O.I.	H.G.	S.X.
0.29	31.1	Os02g0184500	At1g16430	-	-	7e-4	At5g32440	-	O.I.	H.G.	S.X.
0.28	31.1	Os06g0681400	At1g16430	-	Polyubiquitin	1e-160	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.
0.26	25.6	Os07g0166800	At1g16430	-	Rad6 (Ubiquitin carrier protein)	1e-29	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.
0.25	24.1	Os09g0567400	At1g16430	-	Histidine-containing phosphotransfer protein	3e-2	At3g47130	F-box family protein-related	O.I.	H.G.	S.X.
0.25	24.1	Os04g0548000	At1g16430	-	Eukaryotic protein of unknown function DUF862family protein	1e-2	At2g25190	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	Os02g0823300	At1g16430	-	Zn-finger, RING domain containing protein	2e-12	At5g04460	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.24	22.4	Os11g0425600	At1g16430	-	Four F5 protein family protein	5e+0	At5g42040	RPN12b (Regulatory Particle Non-ATPase 12b)	O.I.	H.G.	S.X.
0.24	22.4	Os02g0535700	At1g16430	-	Protein of unknown function DUF1022 family protein	4e-7	At5g22350	ELM1 (ELONGATED MITOCHONDRIA 1)	O.I.	H.G.	S.X.
0.23	21.2	Os01g0731000	At1g16430	-	Conserved hypothetical protein	6e-12	At1g16960	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	Os06g0714000	At1g16430	-	Protein of unknown function UPF0183 family protein	1e-6	At3g51130	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	Os03g0655200	At1g16430	-	Vesicle transport v-SNARE family protein	7e-10	At5g50440	MEMB12 (MEMBRIN 12)	O.I.	H.G.	S.X.
0.18	13.7	Os03g0784900	At1g16430	-	Conserved hypothetical protein	1e-1	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.
0.17	12.6	Os08g0440000	At1g16430	-	Vesicle transport v-SNARE family protein	2e-3	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.
0.17	12.6	Os02g0520800	At1g16430	-	Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP)	5e-14	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.
0.16	11.3	Os05g0516600	At1g16430	-	Small GTP binding protein	1e-32	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.
0.14	9.3	Os04g0390000	At1g16430	-	2-oxoglutarate dehydrogenase, E1 component	6e-49	At5g65750	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	O.I.	H.G.	S.X.
0.13	8.2	Os05g0292200	At1g16430	-	Transcription factor IIA large subunit (TFIIA-L1)	3e+0	At4g14315	unknown protein	O.I.	H.G.	S.X.
0.10	5.7	Os06g0507400	At1g16430	-	BTB/POZ domain containing protein	3e-10	At3g61600	ATPOB1	O.I.	H.G.	S.X.
0.09	4.9	Os03g0756400	At1g16430	-	Conserved hypothetical protein	2e-4	At5g27210	-	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Contig23176_at
Gene name
Homology with Arabidopsis	Similar to At1g16430: surfeit locus protein 5 family protein / SURF5 family protein (HF=9e-1)
Module size	6 genes
NF	0.05
%ile	6.7

Co-expression analysis

Gene ID Contig23176_at Gene name Homology with ArabidopsisSimilar to At1g16430: surfeit locus protein 5 family protein / SURF5 family protein (HF=9e-1) Module size 6 genes NF 0.05 %ile 6.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig23176_at

Gene name
Homology with Arabidopsis Similar to At1g16430: surfeit locus protein 5 family protein / SURF5 family protein (HF=9e-1)

Module size 6 genes

NF 0.05

%ile 6.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays