Co-expression analysis

Gene ID	Contig23176_at
Gene name
Homology with Arabidopsis	Similar to At1g16430: surfeit locus protein 5 family protein / SURF5 family protein (HF=9e-1)
Module size	6 genes
NF	0.05
%ile	6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.92	Contig23176_at	Contig23176	-	-	9e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig14251_at	Contig14251	-	-	4e+0	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	rbasd21g03_s_at	rbasd21g03	-	-	8e+0	At4g39900	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	rbags12j06_s_at	rbags12j06	-	-	4e+0	At3g48880	F-box family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.93	Contig18078_at	Contig18078	-	-	1e+0	At1g66180	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.93	Contig15978_at	Contig15978	-	-	4e-1	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1053.1.S1_at, orthologous to the query gene, Contig23176_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.1053.1.S1_at	At1g16430	-	-	5e-15	At5g17280	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.3343.1.S1_at	At1g16430	-	-	3e-80	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8225.1.A1_at	At1g16430	-	-	1e-6	At1g70330	ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.827.1.S1_at	At1g16430	-	-	2e-6	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.9694.1.S1_at	At1g16430	-	-	6e-6	At4g28980	cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.827.2.S1_x_at	At1g16430	-	-	7e-40	At2g36060	ubiquitin-conjugating enzyme family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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