Co-expression analysis

Gene ID Contig23109_at
Gene name
Homology with ArabidopsisSimilar to At5g67245: unknown protein (HF=2e+0)
Module size 19 genes
NF 0.63
%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8293.10.96Contig23109_atContig23109--2e+0At5g67245unknown proteinO.I.H.G.S.X.
0.8092.50.97Contig19196_atContig19196--1e+0At3g01230unknown proteinO.I.H.G.S.X.
0.7589.50.98Contig18503_atContig18503--1e-1At4g01995unknown proteinO.I.H.G.S.X.
0.7287.40.97Contig10232_atContig10232--1e-1At5g65840-O.I.H.G.S.X.
0.7086.00.97rbags1i23_s_atrbags1i23--2e-16At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.6784.70.97HI05C01u_s_atHI05C01u--3e-1At5g3974060S ribosomal protein L5 (RPL5B)O.I.H.G.S.X.
0.6581.40.97HVSMEa0015H17r2_atHVSMEa0015H17r2--1e+1At5g58470TAF15b (TBP-ASSOCIATED FACTOR 15b)O.I.H.G.S.X.
0.6077.30.98Contig19362_atContig19362--2e+0At5g19340unknown proteinO.I.H.G.S.X.
0.6077.30.98Contig5455_s_atContig5455--4e+0At2g11005glycine-rich proteinO.I.H.G.S.X.
0.5975.80.98Contig23027_atContig23027--1e-1At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.5874.90.97Contig24618_atContig24618--3e-1At5g13180ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)O.I.H.G.S.X.
0.5874.90.98Contig3923_atContig3923--4e-1At3g04460PEX12O.I.H.G.S.X.
0.5572.00.98HS08B03u_s_atHS08B03u--3e-22At5g5842040S ribosomal protein S4 (RPS4D)O.I.H.G.S.X.
0.5572.00.98Contig14535_atContig14535--5e-1At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.5369.70.97Contig16233_atContig16233--3e+0At1g55620CLC-F (CHLORIDE CHANNEL F)O.I.H.G.S.X.
0.5369.70.97Contig15472_atContig15472--1e+1At5g43170AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)O.I.H.G.S.X.
0.5167.50.97Contig14871_atContig14871--2e+0At5g41614unknown proteinO.I.H.G.S.X.
0.5066.90.97Contig14933_s_atContig14933--6e-1At1g14200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4963.70.98Contig19361_atContig19361--1e+0At2g29045LCR62 (Low-molecular-weight cysteine-rich 62)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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