Co-expression analysis

Gene ID Contig23108_at
Gene name
Homology with ArabidopsisSimilar to At3g16280: DNA binding / transcription factor (HF=8e-1)
Module size 6 genes
NF 0.78
%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.99Contig23108_atContig23108--8e-1At3g16280DNA binding / transcription factorO.I.H.G.S.X.
0.7388.70.98Contig21607_atContig21607--2e+1At5g50710unknown proteinO.I.H.G.S.X.
0.7388.70.99Contig3147_atContig3147--3e-4At1g09940HEMA2O.I.H.G.S.X.
0.7187.10.98Contig3198_atContig3198--6e+0At5g25940early nodulin-relatedO.I.H.G.S.X.
0.6784.70.99Contig26171_atContig26171--2e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)O.I.H.G.S.X.
0.5975.80.98Contig18000_atContig18000knotted 1-1e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.10.98Contig2160_atContig2160--2e-34At4g38920ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)O.I.H.G.S.X.
0.8394.00.98Contig10718_atContig10718--2e-7At1g78440ATGA2OX1 (gibberellin 2-oxidase 1)O.I.H.G.S.X.
0.8092.50.96HB04N02r_x_atHB04N02r--1e+1At5g44570unknown proteinO.I.H.G.S.X.
0.7388.70.98Contig5241_atContig5241--8e-2At5g08790ATAF2O.I.H.G.S.X.
0.7187.10.96Contig2577_s_atContig2577--4e+0At5g55810AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)O.I.H.G.S.X.
0.7187.10.96Contig2544_atContig2544--1e+0At3g21890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.6784.70.95Contig14605_atContig14605--1e-8At4g33650DRP3A (DYNAMIN-RELATED PROTEIN 3A)O.I.H.G.S.X.
0.6380.30.95Contig18687_atContig18687--2e-2At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.6178.70.90HB23F22r_atHB23F22r--3e+0At3g58010unknown proteinO.I.H.G.S.X.
0.5268.30.90Contig349_s_atContig349--6e-52At1g09200histone H3O.I.H.G.S.X.
0.5268.30.94HVSMEm0022B10r2_atHVSMEm0022B10r2--8e+0At3g05193unknown proteinO.I.H.G.S.X.
0.5268.30.96Contig5460_s_atContig5460--8e-3At1g04850ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.5066.90.93Contig18661_atContig18661--5e+0At3g17675copper ion binding / electron carrierO.I.H.G.S.X.
0.5066.90.96Contig14916_atContig14916--7e+0At4g11430hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4863.20.97Contig20916_atContig20916--3e-1At5g66160JR700O.I.H.G.S.X.
0.4863.20.97Contig7079_atContig7079--3e-3At2g18980peroxidase, putativeO.I.H.G.S.X.
0.4863.20.92Contig10732_s_atContig10732--4e+0At2g21640-O.I.H.G.S.X.
0.4762.20.97Contig25706_atContig25706--3e-1At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.4661.00.93HVSMEm0015O13r2_atHVSMEm0015O13r2--2e+0At3g49640FAD binding / catalytic/ tRNA dihydrouridine synthaseO.I.H.G.S.X.
0.4458.90.93Contig16646_atContig16646--6e-17At2g24990RIO1 family proteinO.I.H.G.S.X.
0.4458.90.85Contig5324_s_atContig5324--2e-11At5g42390metalloendopeptidaseO.I.H.G.S.X.
0.4356.40.93Contig6904_atContig6904--3e-41At3g11670DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)O.I.H.G.S.X.
0.4255.20.95HA22G05r_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.4053.10.88Contig5537_atContig5537--1e-12At1g11260STP1 (SUGAR TRANSPORTER 1)O.I.H.G.S.X.
0.4053.10.93Contig14663_s_atContig14663--1e+0At4g38940kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4053.10.95Contig17319_atContig17319--2e+0At5g21005unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig5260_s_atContig5260--0At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.3950.50.89Contig14997_atContig14997--3e-2At1g64830aspartyl protease family proteinO.I.H.G.S.X.
0.3849.50.90Contig19596_atContig19596--1e-1At1g23980zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3849.50.95Contig7078_s_atContig7078--2e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.3849.50.96Contig8993_atContig8993--1e-2At5g61430ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)O.I.H.G.S.X.
0.3647.10.94Contig10910_atContig10910--3e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.3647.10.94HVSMEm0017H04r2_atHVSMEm0017H04r2--6e-2At1g7427060S ribosomal protein L35a (RPL35aC)O.I.H.G.S.X.
0.3545.10.96Contig22208_atContig22208--2e+0At1g02330-O.I.H.G.S.X.
0.3443.60.94Contig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.3342.60.87Contig15584_atContig15584--1e-4At3g23480cyclopropane fatty acid synthase-relatedO.I.H.G.S.X.
0.3342.60.93Contig5492_atContig5492--1e-7At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.3342.60.93Contig7800_atContig7800--2e-33At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.3342.60.93Contig7652_atContig7652--3e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.3240.30.93Contig5551_atContig5551--1e-17At2g32260cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putativeO.I.H.G.S.X.
0.3240.30.95Contig9121_atContig9121--3e-6At3g01550PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)O.I.H.G.S.X.
0.3037.00.92HA22G05r_x_atHA22G05r--9e+0At5g26692-O.I.H.G.S.X.
0.3037.00.94Contig18164_atContig18164--1e-11At1g20920DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.3037.00.89Contig18683_atContig18683--1e+0At1g54095unknown proteinO.I.H.G.S.X.
0.3037.00.91Contig6943_atContig6943--4e+0At5g10390histone H3O.I.H.G.S.X.
0.2935.50.94Contig7380_atContig7380--2e-1At3g01513unknown proteinO.I.H.G.S.X.
0.2935.50.88Contig20524_s_atContig20524--3e-1At4g25280adenylate kinase family proteinO.I.H.G.S.X.
0.2935.50.89Contig17793_atContig17793--3e+1At5g52965unknown proteinO.I.H.G.S.X.
0.2935.50.90Contig13417_atContig13417--2e-4At3g06970RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.2935.50.91Contig1790_atContig1790--2e+1At5g10780-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.093.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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