Co-expression analysis

Gene ID	Contig23108_at
Gene name
Homology with Arabidopsis	Similar to At3g16280: DNA binding / transcription factor (HF=8e-1)
Module size	6 genes
NF	0.78
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.99	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.99	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.98	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
3.0	93.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1622324_at, orthologous to the query gene, Contig23108_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.2	1622324_at	At3g16280	-	-	1e-61	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1613232_at	At3g16280	hypothetical LOC100244581	-	1e+0	At1g15710	prephenate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1615757_at	At3g16280	hypothetical protein LOC100251482	-	7e-8	At3g14172	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	1613526_at	At3g16280	-	-	2e-88	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1619724_at	At3g16280	-	-	1e-23	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618092_at	At3g16280	-	-	4e+0	At2g05380	GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618216_at	At3g16280	hypothetical protein LOC100259302	-	5e-47	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1617721_at	At3g16280	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1609123_at	At3g16280	hypothetical protein LOC100259150	-	2e-55	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1618060_at	At3g16280	hypothetical protein LOC100252303	-	5e-41	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1620772_at	At3g16280	hypothetical protein LOC100252015	-	3e-26	At5g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1610259_at	At3g16280	WD-repeat 1	-	2e-14	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1619842_s_at	At3g16280	hypothetical protein LOC100244132	-	1e+0	At5g08220	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1610157_at	At3g16280	-	-	4e-42	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1608453_at	At3g16280	-	-	4e-10	At5g56160	transporter	O.I.	H.G.	S.X.	Please select
0.19	20.9	1613291_at	At3g16280	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1610292_at	At3g16280	hypothetical protein LOC100255417	-	3e-50	At5g26360	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	1617679_at	At3g16280	hypothetical protein LOC100264890	-	4e-65	At4g02930	elongation factor Tu, putative / EF-Tu, putative	O.I.	H.G.	S.X.	Please select
0.18	19.4	1611761_at	At3g16280	-	-	9e-29	At2g07360	SH3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1616071_at	At3g16280	hypothetical protein LOC100259260	-	5e-58	At3g18480	AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1614286_at	At3g16280	hypothetical protein LOC100240938	-	9e-6	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1611041_s_at	At3g16280	hypothetical protein LOC100252175	-	4e-1	At1g19140	-	O.I.	H.G.	S.X.	Please select
0.17	18.2	1621393_at	At3g16280	hypothetical protein LOC100241190	-	2e+0	At3g05520	F-actin capping protein alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1609756_at	At3g16280	hypothetical protein LOC100263684	-	6e-3	At1g18830	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1620068_at	At3g16280	hypothetical protein LOC100260064	-	5e-47	At4g08520	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1613977_at	At3g16280	-	-	4e+0	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1606871_at	At3g16280	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1614341_at	At3g16280	-	-	2e-5	At3g53900	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	1618182_at	At3g16280	hypothetical protein LOC100259544	-	9e-8	At5g08690	ATP synthase beta chain 2, mitochondrial	O.I.	H.G.	S.X.	Please select
0.13	13.3	1611016_at	At3g16280	hypothetical protein LOC100256095	-	2e+0	At2g06555	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1608479_at	At3g16280	hypothetical protein LOC100263231	-	1e+0	At5g07850	transferase family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1607021_at	At3g16280	hypothetical protein LOC100249870	-	2e+0	At3g51890	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.11	11.3	1606551_at	At3g16280	hypothetical protein LOC100255969	-	6e-30	At4g25660	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1608880_at	At3g16280	hypothetical protein LOC100259973	-	1e-16	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.09	9.4	1608449_at	At3g16280	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.09	9.4	1608494_at	At3g16280	hypothetical protein LOC100253260	-	1e-76	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.08	8.5	1612796_at	At3g16280	-	-	5e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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