Co-expression analysis

Gene ID Contig23108_at
Gene name
Homology with ArabidopsisSimilar to At3g16280: DNA binding / transcription factor (HF=8e-1)
Module size 6 genes
NF 0.78
%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.99Contig23108_atContig23108--8e-1At3g16280DNA binding / transcription factorO.I.H.G.S.X.
0.7388.70.98Contig21607_atContig21607--2e+1At5g50710unknown proteinO.I.H.G.S.X.
0.7388.70.99Contig3147_atContig3147--3e-4At1g09940HEMA2O.I.H.G.S.X.
0.7187.10.98Contig3198_atContig3198--6e+0At5g25940early nodulin-relatedO.I.H.G.S.X.
0.6784.70.99Contig26171_atContig26171--2e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)O.I.H.G.S.X.
0.5975.80.98Contig18000_atContig18000knotted 1-1e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.093.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0471100, orthologous to the query gene, Contig23108_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8496.0Os10g0471100At3g16280-Sterol desaturase family protein5e-9At2g37700catalytic/ iron ion binding / oxidoreductaseO.I.H.G.S.X.
0.9699.7Os09g0339800At3g16280-Hypothetical protein1e-1At5g61490-O.I.H.G.S.X.
0.9499.4Os10g0148700At3g16280-Protein of unknown function DUF1210 family protein2e+0At1g65710unknown proteinO.I.H.G.S.X.
0.9399.2Os04g0332700At3g16280-Conserved hypothetical protein8e+0At5g15420unknown proteinO.I.H.G.S.X.
0.9299.1Os06g0226500At3g16280-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e-1At5g59990-O.I.H.G.S.X.
0.9198.9Os10g0533800At3g16280-Protein kinase family protein7e-2At5g10530lectin protein kinase, putativeO.I.H.G.S.X.
0.9097.1Os11g0192400At3g16280-Pectinesterase family protein3e+0At4g19160unknown proteinO.I.H.G.S.X.
0.8896.8Os12g0456700At3g16280-Glycerophosphoryl diester phosphodiesterase familyprotein3e+0At5g52480-O.I.H.G.S.X.
0.8796.6Os12g0564100At3g16280-R2R3MYB-domain protein (Fragment)3e-4At5g49620AtMYB78 (myb domain protein 78)O.I.H.G.S.X.
0.8796.6Os02g0576600At3g16280-Sucrose transporter3e-1At5g51210OLEO3 (OLEOSIN3)O.I.H.G.S.X.
0.8295.0Os07g0632000At3g16280-Xylanase inhibitor protein I precursor6e-1At5g28040transcription regulatorO.I.H.G.S.X.
0.8194.8Os05g0451900At3g16280-Axi 1 (Auxin-independent growth promoter)-likeprotein3e-7At2g37980unknown proteinO.I.H.G.S.X.
0.7993.6Os08g0122900At3g16280-Conserved hypothetical protein2e+0At5g09790ATXR5O.I.H.G.S.X.
0.7993.6Os02g0665300At3g16280-Proteinase inhibitor I9, subtilisin propeptidedomain containing protein1e-4At5g59810SBT5.4O.I.H.G.S.X.
0.7793.1Os03g0215200At3g16280-DL protein (Drooping leaf)6e-7At1g69180CRC (CRABS CLAW)O.I.H.G.S.X.
0.7692.2Os07g0685600At3g16280-Conserved hypothetical protein6e-37At1g16820vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-relatedO.I.H.G.S.X.
0.7491.4Os03g0423300At3g16280-Stearoyl-acyl carrier protein desaturse (EC1.14.99.6) (Fragment)1e-2At5g16230acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.7289.8Os08g0220400At3g16280-Pectinesterase family protein2e-1At3g11820SYP121 (SYNTAXIN OF PLANTS 121)O.I.H.G.S.X.
0.7289.8Os07g0616200At3g16280-Beta-ketoacyl-ACP synthase7e-36At1g74960FAB1 (FATTY ACID BIOSYNTHESIS 1)O.I.H.G.S.X.
0.7189.6Os04g0573900At3g16280-Cytochrome P450-like protein4e+0At3g48520CYP94B3O.I.H.G.S.X.
0.6787.2Os01g0785400At3g16280-GH3 auxin-responsive promoter family protein7e-2At4g27260WES1O.I.H.G.S.X.
0.6583.8Os08g0467300At3g16280-ANTH domain containing protein1e-2At1g25240epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.6281.5Os11g0285000At3g16280-Beta-amyrin synthase3e-17At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.6181.2Os06g0612300At3g16280-Zn-finger, C2H2 type domain containing protein2e-39At3g20880zinc finger (C2H2 type) protein (WIP4)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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