Co-expression analysis

Gene ID	Contig23066_at
Gene name
Homology with Arabidopsis	Similar to At5g54890: RNA binding (HF=1e+0)
Module size	9 genes
NF	0.51
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.97	Contig23066_at	Contig23066	-	-	1e+0	At5g54890	RNA binding	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig11259_at	Contig11259	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.7	95.5	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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