Co-expression analysis

Gene ID	Contig23045_at
Gene name
Homology with Arabidopsis	Similar to At1g64680: unknown protein (HF=3e-13)
Module size	15 genes
NF	0.61
%ile	83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.90	Contig23045_at	Contig23045	-	-	3e-13	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.90	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig20103_at	Contig20103	-	-	4e+0	At5g20460	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig10382_s_at	Contig10382	-	-	6e-38	At5g45190	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.89	HP01G01w_s_at	HP01G01w	-	-	1e+1	At5g45469	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig19806_at	Contig19806	-	-	1e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.90	Contig8761_at	Contig8761	-	-	3e-1	At5g58010	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.88	Contig7156_at	Contig7156	-	-	3e+0	At1g11470	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.90	Contig1646_s_at	Contig1646	-	-	9e-19	At5g37600	ATGSR1	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	HV_CEb0017C21r2_s_at	HV_CEb0017C21r2	-	-	9e+0	At4g05180	PSBQ-2	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.90	Contig10380_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig19674_at	Contig19674	-	-	9e-2	At3g25600	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.90	Contig12046_at	Contig12046	-	-	6e+0	At3g14060	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	Contig9147_at	Contig9147	-	-	7e+0	At5g38630	ACYB-1	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.90	Contig6213_s_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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