Co-expression analysis

Gene ID Contig23039_at
Gene name
Homology with ArabidopsisSimilar to At2g45920: U-box domain-containing protein (HF=4e-2)
Module size 6 genes
NF 0.63
%ile 84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig23039_atContig23039--4e-2At2g45920U-box domain-containing proteinO.I.H.G.S.X.
0.9198.10.96HVSMEm0018O23r2_atHVSMEm0018O23r2--1e-3At4g23150protein kinase family proteinO.I.H.G.S.X.
0.6077.30.97Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.5572.00.97baal1j07_atbaal1j07--5e-15At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.5066.90.97Contig21533_atContig21533--2e+0At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.3240.30.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
7.198.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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