Co-expression analysis

Gene ID	Contig23019_at
Gene name
Homology with Arabidopsis	Similar to At1g73780: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=2e+0)
Module size	29 genes
NF	0.63
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	0.94	Contig23019_at	Contig23019	-	-	2e+0	At1g73780	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.95	HZ55F22r_at	HZ55F22r	-	-	4e+0	At4g18740	transcription termination factor	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.95	HVSMEf0019I03r2_s_at	HVSMEf0019I03r2	-	-	4e+0	At3g57770	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	Contig14886_at	Contig14886	-	-	1e+0	At3g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	HT06M11u_at	HT06M11u	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	HW03P01u_at	HW03P01u	-	-	1e+1	At5g13190	-	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.96	HA31G21r_at	HA31G21r	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	HT05G10u_at	HT05G10u	-	-	9e-1	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig2379_s_at	Contig2379	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	EBro08_SQ007_C12_at	EBro08_SQ007_C12	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	baal1j07_at	baal1j07	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	rbags18m16_at	rbags18m16	-	-	2e+0	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.3	96.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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