Co-expression analysis

Gene ID	Contig23011_at
Gene name
Homology with Arabidopsis	Similar to At5g28650: WRKY74 (HF=3e-26)
Module size	11 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.92	Contig23011_at	Contig23011	-	-	3e-26	At5g28650	WRKY74	O.I.	H.G.	S.X.	Please select
0.82	93.1	0.92	HV12H12u_at	HV12H12u	-	-	2e-45	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig3565_s_at	Contig3565	-	-	2e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Mla12DH_orf_3pri12_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig18430_at	Contig18430	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.93	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.94	Contig13565_at	Contig13565	-	-	9e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.93	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig6960_at	Contig6960	-	-	1e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.9	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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