Co-expression analysis

Gene ID	Contig22905_at
Gene name
Homology with Arabidopsis	Similar to At2g34480: 60S ribosomal protein L18A (RPL18aB) (HF=4e-1)
Module size	6 genes
NF	0.61
%ile	83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig22905_at	Contig22905	-	-	4e-1	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.98	Contig18092_at	Contig18092	-	-	8e-4	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig14735_at	Contig14735	-	-	6e-6	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.98	EBma03_SQ002_K01_s_at	EBma03_SQ002_K01	-	-	5e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.7	99.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.2	99.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.0	99.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.9	99.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.3	99.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.8	98.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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