Co-expression analysis

Gene ID	Contig2281_at
Gene name
Homology with Arabidopsis	Similar to At4g01516: unknown protein (HF=1e+1)
Module size	6 genes
NF	0.42
%ile	58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig2281_at	Contig2281	-	-	1e+1	At4g01516	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig16230_at	Contig16230	-	-	1e+0	At3g17280	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	rbaal31o11_x_at	rbaal31o11	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.97	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.4	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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