Co-expression analysis

Gene ID	Contig22799_at
Gene name
Homology with Arabidopsis	Similar to At4g32551: LUG (LEUNIG) (HF=1e+0)
Module size	6 genes
NF	0.49
%ile	69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig17421_at	Contig17421	-	-	4e+0	At1g45248	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.4	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.6	95.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the grape gene, 1615867_at, orthologous to the query gene, Contig22799_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	1615867_at	At4g32551	-	-	7e-5	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.75	91.3	1622020_s_at	At4g32551	hypothetical protein LOC100261607	-	1e-8	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1613088_at	At4g32551	hypothetical protein LOC100262569	-	5e-1	At5g24660	LSU2 (RESPONSE TO LOW SULFUR 2)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1607534_at	At4g32551	hypothetical protein LOC100248163	-	3e-11	At2g38460	ATIREG1 (IRON-REGULATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1622431_at	At4g32551	hypothetical protein LOC100264392	-	8e-1	At3g06895	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1616564_at	At4g32551	-	-	4e-42	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1615750_at	At4g32551	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1614761_at	At4g32551	hypothetical protein LOC100266857	-	4e+0	At1g69920	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1608615_at	At4g32551	hypothetical protein LOC100255091	-	2e-33	At3g61440	CYSC1 (CYSTEINE SYNTHASE C1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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